Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l24
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.77 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
 Frame = -2

Query: 532  LEVENIIRQRGAVPATVAILKGQLT-VGLTEDQLRYLAQAKGVIKASRRDLAYIAAAKLD 356
            + VEN++ Q+G   AT A    QL   G    Q +Y  Q     + S      IA+ +  
Sbjct: 1127 ISVENLLAQKGLKLATTASHANQLNRQGKQVIQTQY--QVVSQAQTSSGQSKIIASTQQQ 1184

Query: 355  GATTVAGTI--IASELADIPVFVTGG---IG-GVHREGESTLDISADLNELGRSKTLVVC 194
              +  A T+  + ++LA  P+ +  G   +G GV   G   L       +  + + +++ 
Sbjct: 1185 QQSQQAQTVRMVTAQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPSQQQTQQQPIILP 1244

Query: 193  SGIKSI 176
            S + +I
Sbjct: 1245 SQLLNI 1250


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 RWTPPIPPVTKTGMSANSEAIIV 335
           R +P  P +T+TG+S+  ++ I+
Sbjct: 332 RCSPSNPSITRTGLSSVRDSSII 354


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 477 IATVAGTAPRCLIIFSTSRAVSK 545
           I T+   +  C+I F+TS  VSK
Sbjct: 242 INTLLSISASCVIAFATSALVSK 264


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 755 IYFIFRIQDGVPTKWHTET 699
           I F +R  D +PT  +TET
Sbjct: 217 IAFAYRYGDAIPTVPYTET 235


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +3

Query: 201 TSVLLRPSSFRSAEMSSVLSPSRWTPPIPPVTKTG 305
           +++ + P+  +  + S V+  + WT     +T+TG
Sbjct: 471 SNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTG 505


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 443 FRQTNGQLPFKNCHSRWN 496
           F     +LP+ +C++ WN
Sbjct: 89  FMSMRSELPWGSCNNYWN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,795
Number of Sequences: 438
Number of extensions: 5075
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)