Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l23
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    31   0.11 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   4.2  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    26   5.6  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.8  

>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = -3

Query: 476 ERIQQNDVKHENGLSRPSNVPASTMKTFGESDESDH-----RIMEIKKSMYKKPNSSIFS 312
           +R +   +K EN  S      A   K  G  D S H     +I E K S+YK   S++FS
Sbjct: 175 KRQEPESLKKENNNSDYLPKSAMKQKKGGPKDSSKHPSNDGKIPESKPSVYKSRASNLFS 234

Query: 311 GNNENV 294
            N +++
Sbjct: 235 SNEQSI 240


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = -3

Query: 545 GPD--ESEPDFLPPSLWSRHDRVYNERIQQNDVKHENG--LSRPSNVPASTMKTFGESDE 378
           GPD  E EP +   +  SR   + + R+ +   K  +   L R +  PA  ++ FGE   
Sbjct: 250 GPDILEDEPSYSSRASRSRQSSL-SSRLSELPSKRASLEILRRENTFPADPIQEFGEKAY 308

Query: 377 SDHRIMEIKKSMYKKPNSSIFSGNNENVEMRTISA 273
           ++  +ME   +     + ++    NE V    + A
Sbjct: 309 NERELMEEISNFEPLLDDNLLENANEAVNSPVVDA 343


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -3

Query: 563 YEAEYEGPDESEPDFLPPSLWSRHDRVYNERIQQNDVKHENGLSRPSNVPASTMK-TFGE 387
           YE E +   +SE D      ++      +  +     KH++   +      S ++ T   
Sbjct: 218 YEDENDFLQQSEADQPSEDTFTTIGPQNSLTVNSTIEKHKSDNKKTFGTLVSFVEPTITG 277

Query: 386 SDESDHRIMEIKKSMYKKPNS 324
           S++SD+R ++IKKS  KK  S
Sbjct: 278 SEQSDYRQIKIKKSKKKKSKS 298


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 461 NDVKHENGLSR---PSNVPASTMKTFGESDESDHRIMEIKKSMYKKPNSSIFSGNNENVE 291
           N+V + +  +R   P NV  +  ++F  S  S   ++   K+ + KP+   F+ N+  + 
Sbjct: 33  NNVSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNMNSSEIS 92

Query: 290 MRTISARD 267
             T  ARD
Sbjct: 93  -NTHWARD 99


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 347 SMYKKPNSSIFSGNNENVEMRTISARDRYKISAVHNPA-LIDNY 219
           S +K+ NSS  S N     +   S  D  ++SAV N A + +NY
Sbjct: 169 SSFKQNNSSQTSSNKGTTTVAAGSGSDGSRVSAVVNTADISENY 212


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -3

Query: 353 KKSMYKKPNSSIFSGNN 303
           KKS+Y++P++ +++G N
Sbjct: 109 KKSLYEQPHTKLYNGQN 125


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 185 HHWKQTRDRPRRPGANALLNSQSTVAARHTRLLSAVSLMLDKDGAD 48
           H  ++ R+  R+   N  L   +T  AR+  LLS V    DKD  D
Sbjct: 569 HEVERLRES-RKLELNGYLTKPTTRLARYPLLLSGVLKYTDKDNPD 613


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 577 TCVAGPGERRTGPQSKG*ADRGFLE 651
           TCV G GE  TGP +       FL+
Sbjct: 211 TCVVGDGEAETGPTATSWHAHKFLD 235


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 254 SAVHNPALIDNYRPTVI 204
           + V+NP+ + NY PTV+
Sbjct: 577 TTVNNPSAVSNYAPTVL 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,358
Number of Sequences: 5004
Number of extensions: 55988
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)