Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l16
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    70   4e-14
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    70   4e-14
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   1.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    22   9.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    22   9.5  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 70.1 bits (164), Expect = 4e-14
 Identities = 29/43 (67%), Positives = 32/43 (74%)
 Frame = -2

Query: 130 MTKGTSSFGKRRNKTHTLCXXCGXSSYHIQXSKCAQCXYPAAK 2
           MTKGT SFG R NK+HT+C  CG  S+HIQ S CA C YPAAK
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAK 43


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 70.1 bits (164), Expect = 4e-14
 Identities = 29/43 (67%), Positives = 32/43 (74%)
 Frame = -2

Query: 130 MTKGTSSFGKRRNKTHTLCXXCGXSSYHIQXSKCAQCXYPAAK 2
           MTKGT SFG R NK+HT+C  CG  S+HIQ S CA C YPAAK
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAK 43


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -2

Query: 94  NKTHTLCXXCGXSSYHIQXSKCAQCXYP 11
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 90  LFRRLPKLEVPFVILSLLTI 149
           L  RLP + +PF++  L TI
Sbjct: 86  LVSRLPSIVLPFLVRRLTTI 105


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 148 IVKSDKMTKGTSSFGKRRNKTHTLCXXCGXSSYHIQ 41
           ++K  ++T    +FGK+    H L   CG    H Q
Sbjct: 48  VLKYFRITGCLINFGKQPANDHHLWGHCGARLKHTQ 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,253
Number of Sequences: 5004
Number of extensions: 4704
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)