Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l16
         (158 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              19   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   7.4  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 76  CXXCGXSSYHIQXSKCAQC 20
           C     ++ HI+ SK  QC
Sbjct: 104 CSPISDANVHIKISKIFQC 122


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 130 MTKGTSSFGKRRNKTHTLCXXCGXSSYHI 44
           ++KG  SF   R+    LC      +Y++
Sbjct: 92  LSKGEESFPTARSLEKLLCNVEAEENYNL 120


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 125 RHLVTLD 145
           RHLVTLD
Sbjct: 753 RHLVTLD 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,352
Number of Sequences: 438
Number of extensions: 272
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)