Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l15
         (194 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   0.76 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   1.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   1.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   4.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   5.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   7.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    18   9.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 0.76
 Identities = 9/48 (18%), Positives = 20/48 (41%)
 Frame = +1

Query: 22  YLAHEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDNYHSCLCPIAFKH 165
           +L  + + WSQ   +  + VQQ +       +++   H     + + H
Sbjct: 759 WLGQQGNSWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQHAAQMIYGH 806


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 106 FIPRRNDNYHSCLCP 150
           F  RRN  Y+SC CP
Sbjct: 184 FSARRNVEYYSC-CP 197


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 97 WRGFVALRVYAHSLVDSN 44
          W+  +  +VY  S +DSN
Sbjct: 25 WKNAIFYQVYPRSFMDSN 42


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 4/11 (36%), Positives = 9/11 (81%)
 Frame = -3

Query: 129 IVIPPRNKCHL 97
           +++PPR +C +
Sbjct: 462 LILPPRKRCKM 472



 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 13  PHLYLAHEVS 42
           PHL+L  EVS
Sbjct: 369 PHLFLYPEVS 378


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 79  VQQSLAKMAFIPRRN 123
           +Q +  K+AF PRRN
Sbjct: 43  LQCASLKLAFEPRRN 57


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 154 QLDTNRNDN 128
           Q D NRNDN
Sbjct: 527 QNDNNRNDN 535


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase
          protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 85 VALRVYAHSLVDSNG 41
          +  +VY  S  DSNG
Sbjct: 31 IVYQVYPRSFKDSNG 45


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
          protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 85 VALRVYAHSLVDSNG 41
          +  +VY  S  DSNG
Sbjct: 31 IVYQVYPRSFKDSNG 45


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 56  QTVSINAQCNKASPR 100
           Q + + A+CNKA  R
Sbjct: 96  QFIDMVARCNKAGVR 110


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +2

Query: 77  QCNKASPRWHLFLGG 121
           +C+++SP   + +GG
Sbjct: 253 KCDESSPHDQVIIGG 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,037
Number of Sequences: 438
Number of extensions: 934
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)