Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l13
(400 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 1.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 2.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 5.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 6.9
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 1.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 60 GISQRNYMTVSLDYKP 107
GIS RNYM ++D P
Sbjct: 520 GISPRNYMYPNIDISP 535
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFKSTCKIDI 115
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFKSTCKIDI 115
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFKSTCKIDI 115
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 217 LFIPTILLHVLCKIELYI 270
L +PT+L+ LC + Y+
Sbjct: 240 LILPTVLISFLCVLVFYL 257
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CKI++
Sbjct: 166 SCLYVPPGIFKSTCKIDI 183
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CKI++
Sbjct: 166 SCLYVPPGIFKSTCKIDI 183
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CKI++
Sbjct: 98 SCLYVPPGIFGSTCKIDI 115
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CK+++
Sbjct: 98 SCLYVPPGIFKSTCKMDI 115
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 5.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
+CL++P + CKI++
Sbjct: 135 TCLYVPPGIFKSTCKIDI 152
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.9
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +1
Query: 211 SCLFIPTILLHVLCKIEL 264
SCL++P + CK+++
Sbjct: 98 SCLYVPPGIFKSTCKMDV 115
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.6 bits (41), Expect = 6.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 135 TEATRLCRQLVYNLEKQSYSFSVKCPGPSQRQS 37
T T CR+ YN+ + + K PS + S
Sbjct: 95 TSVTPSCRRQRYNIAAANPLLAEKLAAPSSQAS 127
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,713
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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