Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l12
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens ... 85 2e-16
BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open read... 85 3e-16
BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein. 85 3e-16
BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sp... 65 3e-10
BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sp... 65 3e-10
AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein. 65 3e-10
AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein. 65 3e-10
BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein. 62 2e-09
BC039862-1|AAH39862.1| 274|Homo sapiens outer dense fiber of sp... 47 8e-05
BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein. 45 3e-04
AL049637-3|CAI23011.1| 467|Homo sapiens DMRT-like family A2 pro... 36 0.16
AJ301580-1|CAC37946.1| 486|Homo sapiens doublesex-mab-3 (DM) do... 36 0.16
U38292-1|AAB41133.1| 2805|Homo sapiens microtubule-associated pr... 33 1.1
U38291-1|AAB41132.1| 2805|Homo sapiens microtubule-associated pr... 33 1.1
BC151206-1|AAI51207.1| 1837|Homo sapiens KIAA0913 protein protein. 33 1.5
BC117205-1|AAI17206.1| 1101|Homo sapiens KIAA0913 protein protein. 33 1.5
BC111006-1|AAI11007.1| 1231|Homo sapiens KIAA0913 protein protein. 33 1.5
AK023742-1|BAB14664.1| 1081|Homo sapiens protein ( Homo sapiens ... 33 1.5
AB020720-1|BAA74936.1| 1301|Homo sapiens KIAA0913 protein protein. 33 1.5
AB040964-1|BAA96055.2| 1206|Homo sapiens KIAA1531 protein protein. 32 2.0
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 31 3.4
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 3.4
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 3.4
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 3.4
BC017446-1|AAH17446.1| 270|Homo sapiens Unknown (protein for IM... 31 4.5
AB209441-1|BAD92678.1| 879|Homo sapiens fibroblast growth facto... 31 4.5
BT007367-1|AAP36031.1| 868|Homo sapiens programmed cell death 6... 31 6.0
BC068454-1|AAH68454.1| 873|Homo sapiens PDCD6IP protein protein. 31 6.0
BC020066-1|AAH20066.1| 868|Homo sapiens programmed cell death 6... 31 6.0
AY277601-1|AAQ18040.1| 324|Homo sapiens transformation-related ... 31 6.0
AK002122-1|BAA92092.1| 617|Homo sapiens protein ( Homo sapiens ... 31 6.0
AF349951-1|AAK20398.1| 868|Homo sapiens HP95 protein. 31 6.0
AF193039-1|AAG22467.1| 172|Homo sapiens unknown protein. 31 6.0
AB037796-1|BAA92613.1| 546|Homo sapiens KIAA1375 protein protein. 31 6.0
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 30 7.9
U25816-1|AAB61242.1| 218|Homo sapiens TATA-binding protein asso... 30 7.9
U13991-1|AAA62230.1| 218|Homo sapiens TATA-binding protein asso... 30 7.9
M63281-1|AAA52038.1| 207|Homo sapiens type II collagen protein. 30 7.9
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 30 7.9
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 30 7.9
CR541943-1|CAG46741.1| 218|Homo sapiens TAF10 protein. 30 7.9
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 30 7.9
BC012088-1|AAH12088.1| 218|Homo sapiens TAF10 RNA polymerase II... 30 7.9
AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,... 30 7.9
AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,... 30 7.9
AF498312-1|AAM14627.1| 218|Homo sapiens TAF10 RNA polymerase II... 30 7.9
AF308301-1|AAG48268.1| 205|Homo sapiens serologically defined b... 30 7.9
AB103105-1|BAC78803.1| 113|Homo sapiens Pex26pT35insC/del223-27... 30 7.9
AB103104-1|BAC78802.1| 113|Homo sapiens Pex26pT35insC protein. 30 7.9
>AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ40059 fis, clone TCOLN2000139. ).
Length = 289
Score = 85.4 bits (202), Expect = 2e-16
Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y +D +VTR G PA+S SR PGPG+++PE+ PP++ PA+++
Sbjct: 86 PGPIYFLDPKVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPVRHRTPPAFTL 145
Query: 566 GAXLGFAP-RRAGPAPNAYALK--XGS------GSPAYTMGARV----GFQAKAKSPGPA 426
G L P + PAPNAY + GS SP+YT+ R Q A+ PGP
Sbjct: 146 GCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPG 205
Query: 425 VYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHA 249
Y DAN YR + P ++ A+ P + K A+S G +H+
Sbjct: 206 QYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHS 265
Query: 248 DWAPPM 231
A M
Sbjct: 266 KRASTM 271
>BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open reading
frame 19 protein.
Length = 289
Score = 84.6 bits (200), Expect = 3e-16
Identities = 61/186 (32%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y +D +VTR G PA+S SR PGPG+++PE+ PP + PA+++
Sbjct: 86 PGPIYFLDPKVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPARHRTPPAFTL 145
Query: 566 GAXLGFAP-RRAGPAPNAYALK--XGS------GSPAYTMGARV----GFQAKAKSPGPA 426
G L P + PAPNAY + GS SP+YT+ R Q A+ PGP
Sbjct: 146 GCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPG 205
Query: 425 VYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHA 249
Y DAN YR + P ++ A+ P + K A+S G +H+
Sbjct: 206 QYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHS 265
Query: 248 DWAPPM 231
A M
Sbjct: 266 KRASTM 271
>BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein.
Length = 253
Score = 84.6 bits (200), Expect = 3e-16
Identities = 61/186 (32%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y +D +VTR G PA+S SR PGPG+++PE+ PP + PA+++
Sbjct: 50 PGPIYFLDPKVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPARHRTPPAFTL 109
Query: 566 GAXLGFAP-RRAGPAPNAYALK--XGS------GSPAYTMGARV----GFQAKAKSPGPA 426
G L P + PAPNAY + GS SP+YT+ R Q A+ PGP
Sbjct: 110 GCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPG 169
Query: 425 VYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHA 249
Y DAN YR + P ++ A+ P + K A+S G +H+
Sbjct: 170 QYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHS 229
Query: 248 DWAPPM 231
A M
Sbjct: 230 KRASTM 235
>BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 64.9 bits (151), Expect = 3e-10
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y ++ ++ R G PA+S + ++ PGPG + PE+ AP++S+
Sbjct: 66 PGPRYNVNPKILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSI 124
Query: 566 GAXLGFAPRRAGPAPNAYALKXGSG--------SPAYTMGARV---GFQAKA-KSPGPAV 423
A + P P AY L G P++++ R GF K+PGPA
Sbjct: 125 SARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAA 184
Query: 422 YFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHAD 246
Y Q D V + K P Y+ A+ P TK +FG KH+D
Sbjct: 185 YRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSD 244
Query: 245 WAPPMII 225
+ P+++
Sbjct: 245 YMTPLLV 251
>BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 64.9 bits (151), Expect = 3e-10
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y ++ ++ R G PA+S + ++ PGPG + PE+ AP++S+
Sbjct: 66 PGPRYNVNPKILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSI 124
Query: 566 GAXLGFAPRRAGPAPNAYALKXGSG--------SPAYTMGARV---GFQAKA-KSPGPAV 423
A + P P AY L G P++++ R GF K+PGPA
Sbjct: 125 SARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAA 184
Query: 422 YFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHAD 246
Y Q D V + K P Y+ A+ P TK +FG KH+D
Sbjct: 185 YRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSD 244
Query: 245 WAPPMII 225
+ P+++
Sbjct: 245 YMTPLLV 251
>AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein.
Length = 254
Score = 64.9 bits (151), Expect = 3e-10
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y ++ ++ R G PA+S + ++ PGPG + PE+ AP++S+
Sbjct: 66 PGPRYNVNPKILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSI 124
Query: 566 GAXLGFAPRRAGPAPNAYALKXGSG--------SPAYTMGARV---GFQAKA-KSPGPAV 423
A + P P AY L G P++++ R GF K+PGPA
Sbjct: 125 SARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAA 184
Query: 422 YFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHAD 246
Y Q D V + K P Y+ A+ P TK +FG KH+D
Sbjct: 185 YRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSD 244
Query: 245 WAPPMII 225
+ P+++
Sbjct: 245 YMTPLLV 251
>AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein.
Length = 254
Score = 64.9 bits (151), Expect = 3e-10
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y ++ ++ R G PA+S + ++ PGPG + PE+ AP++S+
Sbjct: 66 PGPRYNVNPKILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSI 124
Query: 566 GAXLGFAPRRAGPAPNAYALKXGSG--------SPAYTMGARV---GFQAKA-KSPGPAV 423
A + P P AY L G P++++ R GF K+PGPA
Sbjct: 125 SARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAA 184
Query: 422 YFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHAD 246
Y Q D V + K P Y+ A+ P TK +FG KH+D
Sbjct: 185 YRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSD 244
Query: 245 WAPPMII 225
+ P+++
Sbjct: 245 YMTPLLV 251
>BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein.
Length = 241
Score = 62.1 bits (144), Expect = 2e-09
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Frame = -1
Query: 746 GPGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYS 570
GPGP + + R+T G APA+S A PGPG + PER P AP ++
Sbjct: 53 GPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHT 112
Query: 569 MG-AXLGFAPRRAGPAPNAYALKXGSG--------SPAYTM-GARVG---FQAKAKSPGP 429
+ G + P P AY + G +P ++ G R F+ +K+PGP
Sbjct: 113 IAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGP 172
Query: 428 AVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYNTKKNPYAYSFGTKHA 249
Y VY+++ P ++ AY N+ +K P +SFG +H+
Sbjct: 173 CAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAY--NVDQHRK-PRGWSFGIRHS 229
Query: 248 DWAPPMIIRED 216
D+ P++ D
Sbjct: 230 DYLAPLVTDAD 240
Score = 39.9 bits (89), Expect = 0.010
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = -1
Query: 662 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSM-GAXLGFAPRRAGPAPNAYALKXGS--- 495
P+ T PGPG P R APAYS+ G AP P P Y +
Sbjct: 46 PTPQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLT-PGPGRYFPERAGNAT 104
Query: 494 --GSPAYTMGAR-VGFQAKAKSPGPAVY 420
+P +T+ R G QA+ +SPGPA Y
Sbjct: 105 YPSAPRHTIAPRNWGVQAEQQSPGPAAY 132
Score = 35.9 bits (79), Expect = 0.16
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Frame = -1
Query: 689 PAWSFGAXF----PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAP 522
P W+FG PSR T APGP + C P P + G G P
Sbjct: 17 PGWAFGGHTGPAAPSRRTTEAPGPNT----SCRP-----TPQTTCGPGPGHL------VP 61
Query: 521 NAYALKXGSGSPAYTMGARVGFQAKAKSPGPAVYF-QRDANVYRTKPPMYS 372
++ G+PAY++ R A +PGP YF +R N P ++
Sbjct: 62 ARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHT 112
>BC039862-1|AAH39862.1| 274|Homo sapiens outer dense fiber of sperm
tails 3-like 1 protein.
Length = 274
Score = 46.8 bits (106), Expect = 8e-05
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Frame = -1
Query: 743 PGPAYRID-RVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 567
PGP Y +D ++TR G S P + + E+ P + RAP Y+
Sbjct: 84 PGPCYLLDPKITRFGMSSCPQVPMEERISNLRLNPTLASCQYYFEKIHPPGERRAPQYTF 143
Query: 566 GAXLGFAPRRAGPAPNAYALKXGSG--------SPAYTMGARVG--FQAK--AKSPGPAV 423
G + PAPN Y + G +P Y++ +R F + A PGP
Sbjct: 144 GYRRPYRVMDLNPAPNQYQMPLLLGPNTPVSRAAPCYSLASRDKNWFYKEDVAGGPGPTT 203
Query: 422 YFQRDANVYRTKPPMYS 372
Y + + ++Y+ + P YS
Sbjct: 204 YARPEPSIYQNRSPTYS 220
>BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein.
Length = 109
Score = 44.8 bits (101), Expect = 3e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = -1
Query: 692 APAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGP 528
APA++FGA FP++ T PGPG P R APAYS+ PRR+ P
Sbjct: 28 APAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYG----RPRRSAP 78
Score = 37.5 bits (83), Expect = 0.052
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = -1
Query: 662 PSRAATRA-PGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPN-----AYALKX 501
P + TR PG H P R PRAPA++ GA GP P ++
Sbjct: 7 PGQTLTRMLPGYALHDPSR------PRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRG 60
Query: 500 GSGSPAYTMGARVGFQAKAKSPGP 429
G+PAY++ R A +PGP
Sbjct: 61 TDGAPAYSIYGRPRRSAPFLTPGP 84
>AL049637-3|CAI23011.1| 467|Homo sapiens DMRT-like family A2
protein.
Length = 467
Score = 35.9 bits (79), Expect = 0.16
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Frame = -1
Query: 752 AXGPGPAYRIDRVTRDGXVSAP-AWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPR--- 585
A G GPA D+ +A AW + AA A GPG AP + P P
Sbjct: 284 AAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRP 343
Query: 584 --APAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARVG 459
A A + GA + R A A G+ + AY +GA +G
Sbjct: 344 LLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLG 387
>AJ301580-1|CAC37946.1| 486|Homo sapiens doublesex-mab-3 (DM)
domain protein.
Length = 486
Score = 35.9 bits (79), Expect = 0.16
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Frame = -1
Query: 752 AXGPGPAYRIDRVTRDGXVSAP-AWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPR--- 585
A G GPA D+ +A AW + AA A GPG AP + P P
Sbjct: 303 AAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRP 362
Query: 584 --APAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARVG 459
A A + GA + R A A G+ + AY +GA +G
Sbjct: 363 LLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLG 406
>U38292-1|AAB41133.1| 2805|Homo sapiens microtubule-associated protein
1a protein.
Length = 2805
Score = 33.1 bits (72), Expect = 1.1
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Frame = -1
Query: 689 PAWSFGAXF-PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGA-------XLGFAPRRA 534
P +S+ A P+ PGP S P PP PRAP S G L +P R
Sbjct: 2031 PTFSYAALAGPTVPPRXEPGP-SMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRR 2089
Query: 533 GPAPNAYALKXGSGSPA---YTMGARVGFQAKAKSPGP 429
P+P S + GAR + +A+SP P
Sbjct: 2090 SPSPKESGRSHWDDSTSDSELEKGAREQAEKEAQSPSP 2127
>U38291-1|AAB41132.1| 2805|Homo sapiens microtubule-associated protein
1a protein.
Length = 2805
Score = 33.1 bits (72), Expect = 1.1
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Frame = -1
Query: 689 PAWSFGAXF-PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGA-------XLGFAPRRA 534
P +S+ A P+ PGP S P PP PRAP S G L +P R
Sbjct: 2031 PTFSYAALAGPTVPPRXEPGP-SMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRR 2089
Query: 533 GPAPNAYALKXGSGSPA---YTMGARVGFQAKAKSPGP 429
P+P S + GAR + +A+SP P
Sbjct: 2090 SPSPKESGRSHWDDSTSDSELEKGAREQAEKEAQSPSP 2127
>BC151206-1|AAI51207.1| 1837|Homo sapiens KIAA0913 protein protein.
Length = 1837
Score = 32.7 bits (71), Expect = 1.5
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -1
Query: 680 SFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKX 501
S G P A PGP E+ P P +P + + PR G P+ AL
Sbjct: 1060 SAGPAQPGSVAGAGPGPTEGFTEKNVPESSPHSPCEGLPSEAALTPRPEGKVPSRLALGS 1119
Query: 500 GSG 492
G
Sbjct: 1120 RGG 1122
>BC117205-1|AAI17206.1| 1101|Homo sapiens KIAA0913 protein protein.
Length = 1101
Score = 32.7 bits (71), Expect = 1.5
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -1
Query: 680 SFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKX 501
S G P A PGP E+ P P +P + + PR G P+ AL
Sbjct: 332 SAGPAQPGSVAGAGPGPTEGFTEKNVPESSPHSPCEGLPSEAALTPRPEGKVPSRLALGS 391
Query: 500 GSG 492
G
Sbjct: 392 RGG 394
>BC111006-1|AAI11007.1| 1231|Homo sapiens KIAA0913 protein protein.
Length = 1231
Score = 32.7 bits (71), Expect = 1.5
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -1
Query: 680 SFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKX 501
S G P A PGP E+ P P +P + + PR G P+ AL
Sbjct: 399 SAGPAQPGSVAGAGPGPTEGFTEKNVPESSPHSPCEGLPSEAALTPRPEGKVPSRLALGS 458
Query: 500 GSG 492
G
Sbjct: 459 RGG 461
>AK023742-1|BAB14664.1| 1081|Homo sapiens protein ( Homo sapiens
cDNA FLJ13680 fis, clone PLACE2000007, highly similar to
Homo sapiens mRNA for KIAA0913 protein. ).
Length = 1081
Score = 32.7 bits (71), Expect = 1.5
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -1
Query: 680 SFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKX 501
S G P A PGP E+ P P +P + + PR G P+ AL
Sbjct: 304 SAGPAQPGSVAGAGPGPTEGFTEKNVPESSPHSPCEGLPSEAALTPRPEGKVPSRLALGS 363
Query: 500 GSG 492
G
Sbjct: 364 RGG 366
>AB020720-1|BAA74936.1| 1301|Homo sapiens KIAA0913 protein protein.
Length = 1301
Score = 32.7 bits (71), Expect = 1.5
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -1
Query: 680 SFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKX 501
S G P A PGP E+ P P +P + + PR G P+ AL
Sbjct: 775 SAGPAQPGSVAGAGPGPTEGFTEKNVPESSPHSPCEGLPSEAALTPRPEGKVPSRLALGS 834
Query: 500 GSG 492
G
Sbjct: 835 RGG 837
>AB040964-1|BAA96055.2| 1206|Homo sapiens KIAA1531 protein protein.
Length = 1206
Score = 32.3 bits (70), Expect = 2.0
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 650 ATRAPGPGSHAPERCPPMKDPRAPAYSMGAX---LGFAPRRAGPAPNAYALKXGSGSP 486
A APG P PP PRAP +++G+ L P R GP+ A GSP
Sbjct: 26 AGHAPGARRRGPRGSPP---PRAPLHALGSPGPPLSTPPARLGPSGRRAARPQRCGSP 80
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 31.5 bits (68), Expect = 3.4
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAG-PAPN 519
+A A + G S + A G G AP P P P G P+R G P+P
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 518 AYALKXGSGSPAYTMGARVGFQAKAKSPGPA 426
+ G PA + A A +P PA
Sbjct: 112 RPLVPAGPAPPAAKLRPPPEGSAGACAPVPA 142
Score = 31.5 bits (68), Expect = 3.4
Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Frame = -1
Query: 746 GPGPAYRIDRVTRDGXV-SAPAWSFGAXFPSRAATRAPG-PGSHAPERCPPMKDPRAPAY 573
GP + + G V P + A P+ AA P P AP PP P
Sbjct: 219 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 278
Query: 572 SMGAXLGFAPRRAGPA--PNAYALKXGSG----SPAYTMGARVGFQ------AKAKSPGP 429
+ P A PA P A A GS +PA G G A A +P P
Sbjct: 279 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 338
Query: 428 AVYFQRDANVYRTKPP 381
V + V + PP
Sbjct: 339 GVKAESPKRVVQAAPP 354
>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 31.5 bits (68), Expect = 3.4
Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Frame = -1
Query: 746 GPGPAYRIDRVTRDGXV-SAPAWSFGAXFPSRAATRAPG-PGSHAPERCPPMKDPRAPAY 573
GP + + G V P + A P+ AA P P AP PP P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 572 SMGAXLGFAPRRAGPA--PNAYALKXGSG----SPAYTMGARVGFQ------AKAKSPGP 429
+ P A PA P A A GS +PA G G A A +P P
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Query: 428 AVYFQRDANVYRTKPP 381
V + V + PP
Sbjct: 341 GVKAESPKRVVQAAPP 356
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAG-PAPN 519
+A A + G S + A G G AP P P P G P+R G P+P
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 518 AYALKXGSGSPAYTMGARVGFQAKAKSPGPA 426
+ G PA + A + +P PA
Sbjct: 112 RPLVPAGPAPPAAKLRPPPEGSAGSCAPVPA 142
>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 31.5 bits (68), Expect = 3.4
Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Frame = -1
Query: 746 GPGPAYRIDRVTRDGXV-SAPAWSFGAXFPSRAATRAPG-PGSHAPERCPPMKDPRAPAY 573
GP + + G V P + A P+ AA P P AP PP P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 572 SMGAXLGFAPRRAGPA--PNAYALKXGSG----SPAYTMGARVGFQ------AKAKSPGP 429
+ P A PA P A A GS +PA G G A A +P P
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Query: 428 AVYFQRDANVYRTKPP 381
V + V + PP
Sbjct: 341 GVKAESPKRVVQAAPP 356
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAG-PAPN 519
+A A + G S + A G G AP P P P G P+R G P+P
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 518 AYALKXGSGSPAYTMGARVGFQAKAKSPGPA 426
+ G PA + A + +P PA
Sbjct: 112 RPLVPAGPAPPAAKLRPPPEGSAGSCAPVPA 142
>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 31.5 bits (68), Expect = 3.4
Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Frame = -1
Query: 746 GPGPAYRIDRVTRDGXV-SAPAWSFGAXFPSRAATRAPG-PGSHAPERCPPMKDPRAPAY 573
GP + + G V P + A P+ AA P P AP PP P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 572 SMGAXLGFAPRRAGPA--PNAYALKXGSG----SPAYTMGARVGFQ------AKAKSPGP 429
+ P A PA P A A GS +PA G G A A +P P
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Query: 428 AVYFQRDANVYRTKPP 381
V + V + PP
Sbjct: 341 GVKAESPKRVVQAAPP 356
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAG-PAPN 519
+A A + G S + A G G AP P P P G P+R G P+P
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 518 AYALKXGSGSPAYTMGARVGFQAKAKSPGPA 426
+ G PA + A + +P PA
Sbjct: 112 RPLVPAGPAPPAAKLRPPPEGSAGSCAPVPA 142
>BC017446-1|AAH17446.1| 270|Homo sapiens Unknown (protein for
IMAGE:3503958) protein.
Length = 270
Score = 31.1 bits (67), Expect = 4.5
Identities = 24/85 (28%), Positives = 29/85 (34%)
Frame = -1
Query: 686 AWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYAL 507
AW P+R TR S R PP P P G + P P A +
Sbjct: 7 AWCARVPRPARGPTRGGAQSSGWVTRTPPPSPPEPPQEKPGWTRSWLPLPLQACPPALSF 66
Query: 506 KXGSGSPAYTMGARVGFQAKAKSPG 432
P+ A+V FQ KS G
Sbjct: 67 WGPRLQPSAQSPAQVMFQCLWKSCG 91
>AB209441-1|BAD92678.1| 879|Homo sapiens fibroblast growth factor
receptor 3 isoform 1 precursor variant protein.
Length = 879
Score = 31.1 bits (67), Expect = 4.5
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 686 AWSFGAXFPSRAATRAPGPGSH-APERCPPMKDPRAPAYSMGAXLGFAPRRAGPAP 522
+W+ G + AA PG G+ +PER PP RA + A PAP
Sbjct: 31 SWARGQRAGAGAARSEPGSGARQSPERRPPPAGARAGPWGAACPRALPEDAAAPAP 86
>BT007367-1|AAP36031.1| 868|Homo sapiens programmed cell death 6
interacting protein protein.
Length = 868
Score = 30.7 bits (66), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNA 516
SAP+ A S A AP P + AP PP K P+ PA L + AP+
Sbjct: 718 SAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTK-PQPPARPPPPVLPANRAPSATAPSP 776
Query: 515 YALKXGSGSPAYTMGARVGFQAK 447
+ +P+ T G+ QA+
Sbjct: 777 VGAGTAAPAPSQTPGSAPPPQAQ 799
>BC068454-1|AAH68454.1| 873|Homo sapiens PDCD6IP protein protein.
Length = 873
Score = 30.7 bits (66), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNA 516
SAP+ A S A AP P + AP PP K P+ PA L + AP+
Sbjct: 723 SAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTK-PQPPARPPPPVLPANRAPSATAPSP 781
Query: 515 YALKXGSGSPAYTMGARVGFQAK 447
+ +P+ T G+ QA+
Sbjct: 782 VGAGTAAPAPSQTPGSAPPPQAQ 804
>BC020066-1|AAH20066.1| 868|Homo sapiens programmed cell death 6
interacting protein protein.
Length = 868
Score = 30.7 bits (66), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNA 516
SAP+ A S A AP P + AP PP K P+ PA L + AP+
Sbjct: 718 SAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTK-PQPPARPPPPVLPANRAPSATAPSP 776
Query: 515 YALKXGSGSPAYTMGARVGFQAK 447
+ +P+ T G+ QA+
Sbjct: 777 VGAGTAAPAPSQTPGSAPPPQAQ 799
>AY277601-1|AAQ18040.1| 324|Homo sapiens transformation-related
protein 16 protein.
Length = 324
Score = 30.7 bits (66), Expect = 6.0
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = -1
Query: 662 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLG----FAPRRAGPAPNAYA 510
P+ R PGPG A PP P S+ +G +PR AGP A A
Sbjct: 8 PAALKLRGPGPGLAAAAGTPPYGHPCMSCVSLRRDMGNSGATSPRTAGPEQRALA 62
>AK002122-1|BAA92092.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ11260 fis, clone PLACE1009060, weakly similar to
BRO1 PROTEIN. ).
Length = 617
Score = 30.7 bits (66), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNA 516
SAP+ A S A AP P + AP PP K P+ PA L + AP+
Sbjct: 467 SAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTK-PQPPARPPPPVLPANRAPSATAPSP 525
Query: 515 YALKXGSGSPAYTMGARVGFQAK 447
+ +P+ T G+ QA+
Sbjct: 526 VGAGTAAPAPSQTPGSAPPPQAQ 548
>AF349951-1|AAK20398.1| 868|Homo sapiens HP95 protein.
Length = 868
Score = 30.7 bits (66), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNA 516
SAP+ A S A AP P + AP PP K P+ PA L + AP+
Sbjct: 718 SAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTK-PQPPARPPPPVLPANRAPSATAPSP 776
Query: 515 YALKXGSGSPAYTMGARVGFQAK 447
+ +P+ T G+ QA+
Sbjct: 777 VGAGTAAPAPSQTPGSAPPPQAQ 799
>AF193039-1|AAG22467.1| 172|Homo sapiens unknown protein.
Length = 172
Score = 30.7 bits (66), Expect = 6.0
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Frame = -1
Query: 650 ATRAPGPGSHAPERCPPMKDPRAPAYS----MGAXLGFA------PRRAGPAPNAYALKX 501
A RAPG + P R P ++ P P + A G A P RAG P A
Sbjct: 23 APRAPGHEAQHPGRAPALRPPPQPVGQRRPLVAAHPGDAAGRDQGPPRAGAGPG--AAHH 80
Query: 500 GSGSPAYTMGARVGFQAKAK 441
GSG A G R G +A+
Sbjct: 81 GSGEHAVRAGGRHGLAPRAR 100
>AB037796-1|BAA92613.1| 546|Homo sapiens KIAA1375 protein protein.
Length = 546
Score = 30.7 bits (66), Expect = 6.0
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 695 SAPAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNA 516
SAP+ A S A AP P + AP PP K P+ PA L + AP+
Sbjct: 396 SAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTK-PQPPARPPPPVLPANRAPSATAPSP 454
Query: 515 YALKXGSGSPAYTMGARVGFQAK 447
+ +P+ T G+ QA+
Sbjct: 455 VGAGTAAPAPSQTPGSAPPPQAQ 477
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = -1
Query: 746 GP-GPAYRIDRVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPP-MKDPRAPAY 573
GP GP + +DG P G P R + GP PP P P
Sbjct: 1092 GPRGPPGPVGPSGKDGANGIPG-PIGPPGP-RGRSGETGPAGPPGNPGPPGPPGPPGPGI 1149
Query: 572 SMGAXLGFAPRRAGPAPNAY 513
M A G PR GP P Y
Sbjct: 1150 DMSAFAGLGPREKGPDPLQY 1169
>U25816-1|AAB61242.1| 218|Homo sapiens TATA-binding protein
associated factor 30 kDa subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 641 APGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 462
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 461 GFQAKAKSPGP 429
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>U13991-1|AAA62230.1| 218|Homo sapiens TATA-binding protein
associated factor 30 kDa subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 641 APGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 462
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 461 GFQAKAKSPGP 429
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>M63281-1|AAA52038.1| 207|Homo sapiens type II collagen protein.
Length = 207
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = -1
Query: 746 GP-GPAYRIDRVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPP-MKDPRAPAY 573
GP GP + +DG P G P R + GP PP P P
Sbjct: 80 GPRGPPGPVGPSGKDGANGIPG-PIGPPGP-RGRSGETGPAGPPGNPGPPGPPGPPGPGI 137
Query: 572 SMGAXLGFAPRRAGPAPNAY 513
M A G PR GP P Y
Sbjct: 138 DMSAFAGLGPREKGPDPLQY 157
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = -1
Query: 746 GP-GPAYRIDRVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPP-MKDPRAPAY 573
GP GP + +DG P G P R + GP PP P P
Sbjct: 1161 GPRGPPGPVGPSGKDGANGIPG-PIGPPGP-RGRSGETGPAGPPGNPGPPGPPGPPGPGI 1218
Query: 572 SMGAXLGFAPRRAGPAPNAY 513
M A G PR GP P Y
Sbjct: 1219 DMSAFAGLGPREKGPDPLQY 1238
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = -1
Query: 746 GP-GPAYRIDRVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPP-MKDPRAPAY 573
GP GP + +DG P G P R + GP PP P P
Sbjct: 130 GPRGPPGPVGPSGKDGANGIPG-PIGPPGP-RGRSGETGPAGPPGNPGPPGPPGPPGPGI 187
Query: 572 SMGAXLGFAPRRAGPAPNAY 513
M A G PR GP P Y
Sbjct: 188 DMSAFAGLGPREKGPDPLQY 207
>CR541943-1|CAG46741.1| 218|Homo sapiens TAF10 protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 641 APGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 462
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 461 GFQAKAKSPGP 429
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = -1
Query: 746 GP-GPAYRIDRVTRDGXVSAPAWSFGAXFPSRAATRAPGPGSHAPERCPP-MKDPRAPAY 573
GP GP + +DG P G P R + GP PP P P
Sbjct: 1161 GPRGPPGPVGPSGKDGANGIPG-PIGPPGP-RGRSGETGPAGPPGNPGPPGPPGPPGPGI 1218
Query: 572 SMGAXLGFAPRRAGPAPNAY 513
M A G PR GP P Y
Sbjct: 1219 DMSAFAGLGPREKGPDPLQY 1238
>BC012088-1|AAH12088.1| 218|Homo sapiens TAF10 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 30kD
protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 641 APGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 462
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 461 GFQAKAKSPGP 429
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 30.3 bits (65), Expect = 7.9
Identities = 30/94 (31%), Positives = 35/94 (37%)
Frame = -1
Query: 662 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPA 483
P AT A PG A PP P P + G A PAP A G PA
Sbjct: 138 PPAPATLARPPGHPAG---PPTAAPAVPPPAAAQNGGSAGAAPAPAPAA-------GGPA 187
Query: 482 YTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPP 381
G + G A A +P P V + V + PP
Sbjct: 188 GVSG-QPGPGAAAAAPAPGVKAESPKRVVQAAPP 220
>AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 30.3 bits (65), Expect = 7.9
Identities = 30/94 (31%), Positives = 35/94 (37%)
Frame = -1
Query: 662 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPA 483
P AT A PG A PP P P + G A PAP A G PA
Sbjct: 138 PPAPATLARPPGHPAG---PPTAAPAVPPPAAAQNGGSAGAAPAPAPAA-------GGPA 187
Query: 482 YTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPP 381
G + G A A +P P V + V + PP
Sbjct: 188 GVSG-QPGPGAAAAAPAPGVKAESPKRVVQAAPP 220
>AF498312-1|AAM14627.1| 218|Homo sapiens TAF10 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 30 k
protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 641 APGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 462
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 461 GFQAKAKSPGP 429
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>AF308301-1|AAG48268.1| 205|Homo sapiens serologically defined
breast cancer antigen NY-BR-87 protein.
Length = 205
Score = 30.3 bits (65), Expect = 7.9
Identities = 36/127 (28%), Positives = 48/127 (37%), Gaps = 1/127 (0%)
Frame = -1
Query: 758 IRAXGPGPAYRIDRVTRDGXVSAPAWSFGAXFPSRAATRAPGP-GSHAPERCPPMKDPRA 582
+RA G PA DR V GA PSR + A GP G R ++
Sbjct: 50 LRADGALPALPPDRARPQDGVRVRGAEEGARGPSRGSGGAQGPEGRRRAPRADGLEPGGE 109
Query: 581 PAYSMGAXLGFAPRRAGPAPNAYALKXGSGSPAYTMGARVGFQAKAKSPGPAVYFQRDAN 402
PA + A + AG A A G+G P GA +G A+ G A R
Sbjct: 110 PAAARAAD---SEAAAGGAGAGAAAGVGAG-PQGRRGAGLG---AAQGAGSAAAAGRGEK 162
Query: 401 VYRTKPP 381
++ + P
Sbjct: 163 LHHPREP 169
>AB103105-1|BAC78803.1| 113|Homo sapiens Pex26pT35insC/del223-271
protein.
Length = 113
Score = 30.3 bits (65), Expect = 7.9
Identities = 26/87 (29%), Positives = 34/87 (39%)
Frame = -1
Query: 689 PAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYA 510
P + G RA R PGPG+ R P R P + G G RAG A +
Sbjct: 12 PQGARGTPAQQRAGARGPGPGA---GRGPSGGGGRPPGGAPGLPGGAGDLRAGLAESGQP 68
Query: 509 LKXGSGSPAYTMGARVGFQAKAKSPGP 429
+ G G+ + +G V PGP
Sbjct: 69 -RRGRGTRGHLIGGEV-LPVCCGDPGP 93
>AB103104-1|BAC78802.1| 113|Homo sapiens Pex26pT35insC protein.
Length = 113
Score = 30.3 bits (65), Expect = 7.9
Identities = 26/87 (29%), Positives = 34/87 (39%)
Frame = -1
Query: 689 PAWSFGAXFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAXLGFAPRRAGPAPNAYA 510
P + G RA R PGPG+ R P R P + G G RAG A +
Sbjct: 12 PQGARGTPAQQRAGARGPGPGA---GRGPSGGGGRPPGGAPGLPGGAGDLRAGLAESGQP 68
Query: 509 LKXGSGSPAYTMGARVGFQAKAKSPGP 429
+ G G+ + +G V PGP
Sbjct: 69 -RRGRGTRGHLIGGEV-LPVCCGDPGP 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,825,970
Number of Sequences: 237096
Number of extensions: 2279036
Number of successful extensions: 8668
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 7279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8603
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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