Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l11
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   8.2  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -3

Query: 285 ASSVNPVRLRL-MPSRSYEHSSLRRDASAALH 193
           ++++NPV+  L MP +++EHS L R + AALH
Sbjct: 635 SAALNPVQNPLLMPQQNHEHSPLVR-SDAALH 665


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 719 NDNSGSTRQSAFGYCGPRSFDEVPEE-PAASDP 624
           NDN   TR+S++      +F++ PEE P AS+P
Sbjct: 252 NDNDSQTRRSSWSSIA-SAFNDFPEEFPNASNP 283


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = -3

Query: 516  LQDRASRSAHRAMEKVNSFVGS--VHQRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPP 343
            L+DRA+R    A  ++N  + +  +  R +G   PAP +  T T  A   + +     P 
Sbjct: 1226 LEDRAARIKAEAQRRMNERLAALGIKPRQKGTPSPAPVNSATSTPVAAPTAQQ---IQPG 1282

Query: 342  TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLR 217
               S    N P+     +   +V P      P++    ++++
Sbjct: 1283 KQASAVSSNVPAVSASISTPPAVVPTVQHPQPTKQIPTAAVK 1324


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
 Frame = -3

Query: 432 GFSRPAPPSP-DTHTVRA------RLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSV 274
           G   P+P S  D+H  R+      R RSSR   S  P++RSR   +  SR    +   S 
Sbjct: 127 GSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSR 186

Query: 273 NPVRLRLMPSRS-----YEHSSLRRDASAALHRTPATLVLAELQQNNRCEEERPWRSM 115
           +  R     SRS     Y++  LR D  +  H    +      + +   EEER  R++
Sbjct: 187 SRRRYEERSSRSSRAHDYDYEDLRDDDRS--HERKRSRSRPRERSSKLSEEERDRRTV 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,542
Number of Sequences: 5004
Number of extensions: 59590
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)