Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l11
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein. 32 1.8
X63071-1|CAA44793.1| 1179|Homo sapiens DBP-5 protein protein. 32 1.8
M36428-1|AAA36624.1| 483|Homo sapiens protein ( Human son3 prot... 32 1.8
AY026895-1|AAK07692.1| 2386|Homo sapiens NREBP protein. 32 1.8
AF380184-1|AAL34502.1| 2426|Homo sapiens SON DNA binding protein... 32 1.8
AF380183-1|AAL34501.1| 2108|Homo sapiens SON DNA binding protein... 32 1.8
AF380181-1|AAL34499.1| 2325|Homo sapiens SON DNA binding protein... 32 1.8
AF380180-1|AAL34498.1| 2303|Homo sapiens SON DNA binding protein... 32 1.8
AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein... 32 1.8
AB028942-1|BAA82971.2| 2309|Homo sapiens KIAA1019 protein protein. 32 1.8
BC050588-1|AAH50588.1| 957|Homo sapiens melanoma antigen family... 31 4.1
AL096827-1|CAI42970.1| 957|Homo sapiens melanoma antigen family... 31 4.1
AF490507-1|AAM08354.1| 957|Homo sapiens hepatocellular carcinom... 31 4.1
AB046807-1|BAB13413.1| 991|Homo sapiens KIAA1587 protein protein. 31 4.1
BC048196-1|AAH48196.1| 256|Homo sapiens GIT1 protein protein. 31 5.5
BC005106-1|AAH05106.1| 238|Homo sapiens chromosome 12 open read... 30 7.3
AB073599-1|BAD38639.1| 238|Homo sapiens putative protein produc... 30 7.3
Y16281-1|CAA76154.1| 529|Homo sapiens nicotinic acetylcholine r... 30 9.6
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 30 9.6
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 30 9.6
U62431-1|AAB40109.1| 529|Homo sapiens nicotinic acetylcholine r... 30 9.6
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 30 9.6
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 30 9.6
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 30 9.6
>X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein.
Length = 1523
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 891 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 950
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 951 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 1010
Query: 159 QQN 151
+++
Sbjct: 1011 RRS 1013
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 868 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 927
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 928 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 981
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 982 SRRSRTPSRRRRSRSVVR 999
>X63071-1|CAA44793.1| 1179|Homo sapiens DBP-5 protein protein.
Length = 1179
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 754 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 813
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 814 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 873
Query: 159 QQN 151
+++
Sbjct: 874 RRS 876
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 731 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 790
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 791 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 844
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 845 SRRSRTPSRRRRSRSVVR 862
>M36428-1|AAA36624.1| 483|Homo sapiens protein ( Human son3 protein
gene, partial cds. ).
Length = 483
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 206 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 265
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 266 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 325
Query: 159 QQN 151
+++
Sbjct: 326 RRS 328
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 183 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 242
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 243 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 296
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 297 SRRSRTPSRRRRSRSVVR 314
>AY026895-1|AAK07692.1| 2386|Homo sapiens NREBP protein.
Length = 2386
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1858 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1917
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1918 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 1977
Query: 159 QQN 151
+++
Sbjct: 1978 RRS 1980
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1835 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1894
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1895 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1948
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1949 SRRSRTPSRRRRSRSVVR 1966
>AF380184-1|AAL34502.1| 2426|Homo sapiens SON DNA binding protein
isoform F protein.
Length = 2426
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1898 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1957
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1958 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 2017
Query: 159 QQN 151
+++
Sbjct: 2018 RRS 2020
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1875 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1934
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1935 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1988
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1989 SRRSRTPSRRRRSRSVVR 2006
>AF380183-1|AAL34501.1| 2108|Homo sapiens SON DNA binding protein
isoform E protein.
Length = 2108
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1898 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1957
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1958 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 2017
Query: 159 QQN 151
+++
Sbjct: 2018 RRS 2020
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1875 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1934
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1935 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1988
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1989 SRRSRTPSRRRRSRSVVR 2006
>AF380181-1|AAL34499.1| 2325|Homo sapiens SON DNA binding protein
isoform C protein.
Length = 2325
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1898 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1957
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1958 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 2017
Query: 159 QQN 151
+++
Sbjct: 2018 RRS 2020
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1875 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1934
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1935 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1988
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1989 SRRSRTPSRRRRSRSVVR 2006
>AF380180-1|AAL34498.1| 2303|Homo sapiens SON DNA binding protein
isoform B protein.
Length = 2303
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1898 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1957
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1958 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 2017
Query: 159 QQN 151
+++
Sbjct: 2018 RRS 2020
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1875 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1934
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1935 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1988
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1989 SRRSRTPSRRRRSRSVVR 2006
>AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein
isoform A protein.
Length = 2140
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1579 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1638
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1639 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 1698
Query: 159 QQN 151
+++
Sbjct: 1699 RRS 1701
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1556 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1615
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1616 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1669
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1670 SRRSRTPSRRRRSRSVVR 1687
>AB028942-1|BAA82971.2| 2309|Homo sapiens KIAA1019 protein protein.
Length = 2309
Score = 32.3 bits (70), Expect = 1.8
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 7/123 (5%)
Frame = -3
Query: 498 RSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSS----RRWMSAPPTARS 331
RS R ++ S + +R SR +HT R RS RR S P+ RS
Sbjct: 1904 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRS 1963
Query: 330 RA---ECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAEL 160
R PSR + S P R PSR S RR + + + R ++ L
Sbjct: 1964 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRL 2023
Query: 159 QQN 151
+++
Sbjct: 2024 RRS 2026
Score = 30.7 bits (66), Expect = 5.5
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQ-RLRGFSRPAPPSPDTH-TVRARLRS-SRRWMSAPP 343
+ R+ R++ K H+ + R R S D TVRAR R+ SRR S P
Sbjct: 1881 RSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTP 1940
Query: 342 TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLRRDASAALHRTPATLVLAE 163
+ R R+ S GR+ + S++P R PSR S R + RTP+
Sbjct: 1941 SRRRRSR----SVGRRRSF--SISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1994
Query: 162 LQQNNRCEEERPWRSMAK 109
+++ R RS+ +
Sbjct: 1995 SRRSRTPSRRRRSRSVVR 2012
>BC050588-1|AAH50588.1| 957|Homo sapiens melanoma antigen family E,
1 protein.
Length = 957
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 209 RVQPCTGHQRRWCWRNSSRTIGVRKSVPGEAWPSYPSNQLLLQKHCIS 66
RV T H W + G+ VPG P PS+ +LQ C S
Sbjct: 14 RVAKATAHNSSWGEMQAPNAPGLPADVPGSDVPQGPSDSQILQGLCAS 61
>AL096827-1|CAI42970.1| 957|Homo sapiens melanoma antigen family E,
1 protein.
Length = 957
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 209 RVQPCTGHQRRWCWRNSSRTIGVRKSVPGEAWPSYPSNQLLLQKHCIS 66
RV T H W + G+ VPG P PS+ +LQ C S
Sbjct: 14 RVAKATAHNSSWGEMQAPNAPGLPADVPGSDVPQGPSDSQILQGLCAS 61
>AF490507-1|AAM08354.1| 957|Homo sapiens hepatocellular
carcinoma-associated protein HCA1 protein.
Length = 957
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 209 RVQPCTGHQRRWCWRNSSRTIGVRKSVPGEAWPSYPSNQLLLQKHCIS 66
RV T H W + G+ VPG P PS+ +LQ C S
Sbjct: 14 RVAKATAHNSSWGEMQAPNAPGLPADVPGSDVPQGPSDSQILQGLCAS 61
>AB046807-1|BAB13413.1| 991|Homo sapiens KIAA1587 protein protein.
Length = 991
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 209 RVQPCTGHQRRWCWRNSSRTIGVRKSVPGEAWPSYPSNQLLLQKHCIS 66
RV T H W + G+ VPG P PS+ +LQ C S
Sbjct: 48 RVAKATAHNSSWGEMQAPNAPGLPADVPGSDVPQGPSDSQILQGLCAS 95
>BC048196-1|AAH48196.1| 256|Homo sapiens GIT1 protein protein.
Length = 256
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/71 (32%), Positives = 27/71 (38%)
Frame = -3
Query: 513 QDRASRSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPPTAR 334
Q R R A RA + R R PP+P T RA S R P A
Sbjct: 30 QPRGGRLAGRAEPRRGLAGAGPGSRGRRRRPGPPPAPPTLAQRAAAASPLRMSRKGPRAE 89
Query: 333 SRAECNAPSRG 301
A+C+AP G
Sbjct: 90 VCADCSAPDPG 100
>BC005106-1|AAH05106.1| 238|Homo sapiens chromosome 12 open reading
frame 32 protein.
Length = 238
Score = 30.3 bits (65), Expect = 7.3
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 312 PSRGRKCACASSVNPV-RLRLMPSRSYEHSSLRRDASAALHRTPATLVLAELQQNNRCEE 136
P G K +CAS+ P+ R +PS+ +HS++ S +L A + NR
Sbjct: 22 PLEGPKHSCASTQLPITHTRQVPSKPIDHSTITSWVSPDFDTAAGSLFPAYQKHQNRARH 81
Query: 135 ERPWRSMAKLP 103
+ +K P
Sbjct: 82 SSRKPTTSKFP 92
>AB073599-1|BAD38639.1| 238|Homo sapiens putative protein product
of HKMT1188 protein.
Length = 238
Score = 30.3 bits (65), Expect = 7.3
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 312 PSRGRKCACASSVNPV-RLRLMPSRSYEHSSLRRDASAALHRTPATLVLAELQQNNRCEE 136
P G K +CAS+ P+ R +PS+ +HS++ S +L A + NR
Sbjct: 22 PLEGPKHSCASTQLPITHTRQVPSKPIDHSTITSWVSPDFDTAAGSLFPAYQKHQNRARH 81
Query: 135 ERPWRSMAKLP 103
+ +K P
Sbjct: 82 SSRKPTTSKFP 92
>Y16281-1|CAA76154.1| 529|Homo sapiens nicotinic acetylcholine
receptor alpha2 subunit precursor protein.
Length = 529
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = -3
Query: 426 SRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPVRLRLMP 247
+RP PP H +R +L S W+ + A R E R ACA V P + +
Sbjct: 381 NRPPPPVELCHPLRLKLSPSYHWLESNVDAEER-EVVVEEEDR-WACAGHVAP-SVGTLC 437
Query: 246 SRSYEHSSLRRDASAALHRTPATLVLAELQQ 154
S + HS + AL + L+ +Q+
Sbjct: 438 SHGHLHSGASGPKAEALLQEGELLLSPHMQK 468
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 444 QRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPV 265
Q + G RPA P P T+R R MS A + + P R A A++ P
Sbjct: 445 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGP---RPAAAAAAATPA 501
Query: 264 RLRLMPSRSY 235
+R +P Y
Sbjct: 502 -VRTVPQYKY 510
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 444 QRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPV 265
Q + G RPA P P T+R R MS A + + P R A A++ P
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGP---RPAAAAAAATPA 504
Query: 264 RLRLMPSRSY 235
+R +P Y
Sbjct: 505 -VRTVPQYKY 513
>U62431-1|AAB40109.1| 529|Homo sapiens nicotinic acetylcholine
receptor alpha2 subunit precursor protein.
Length = 529
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = -3
Query: 426 SRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPVRLRLMP 247
+RP PP H +R +L S W+ + A R E R ACA V P + +
Sbjct: 381 NRPPPPVELCHPLRLKLSPSYHWLESNVDAEER-EVVVEEEDR-WACAGHVAP-SVGTLC 437
Query: 246 SRSYEHSSLRRDASAALHRTPATLVLAELQQ 154
S + HS + AL + L+ +Q+
Sbjct: 438 SHGHLHSGASGPKAEALLQEGELLLSPHMQK 468
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 444 QRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPV 265
Q + G RPA P P T+R R MS A + + P R A A++ P
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGP---RPAAAAAAATPA 504
Query: 264 RLRLMPSRSY 235
+R +P Y
Sbjct: 505 -VRTVPQYKY 513
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 444 QRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPV 265
Q + G RPA P P T+R R MS A + + P R A A++ P
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGP---RPAAAAAAATPA 504
Query: 264 RLRLMPSRSY 235
+R +P Y
Sbjct: 505 -VRTVPQYKY 513
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 444 QRLRGFSRPAPPSPDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNPV 265
Q + G RPA P P T+R R MS A + + P R A A++ P
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGP---RPAAAAAAATPA 504
Query: 264 RLRLMPSRSY 235
+R +P Y
Sbjct: 505 -VRTVPQYKY 513
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,450,563
Number of Sequences: 237096
Number of extensions: 2502662
Number of successful extensions: 7482
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7476
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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