Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l06
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   0.75 
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    23   4.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    23   7.0  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    23   7.0  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    22   9.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    22   9.3  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    22   9.3  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    22   9.3  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    22   9.3  

>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 6   INHIHYLYIGIISSVESKLKLCQYFIVQHC 95
           +N+I YL +GI++S  S L +C+ F V  C
Sbjct: 489 MNNIAYL-LGIVTSFLSHLIICKIFPVTAC 517


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 114 DRWDKDSSVVL*NIDIISICFLLKK 40
           D  D D ++   N+DI+  CFL K+
Sbjct: 233 DEKDLDFAIETTNLDIVVSCFLEKR 257


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 2   RYKPYSLFVYWNHFFS 49
           RY+P+  + YW  F S
Sbjct: 703 RYEPWCNYTYWQTFVS 718


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 186 SLKNISKASIISGDCEN 136
           S+ +I KAS++  DC+N
Sbjct: 127 SIWDIEKASLLVNDCQN 143


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 144 CENTPPHSHRDRWDKD 97
           CEN  PHS  D  D++
Sbjct: 609 CENIIPHSRSDDLDEE 624


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 128  GGVFSQSPLMMDAFEIFFKD 187
            GGV   +P+  + FEI + D
Sbjct: 1283 GGVLHDAPITCEKFEIHYVD 1302


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  AIFIPSITM*VWWCIFTVT 150
           AI I SI + +W+C F +T
Sbjct: 301 AITIQSIHLGLWFCFFFLT 319


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 150 GDCEN--TPPHSHRDRWDKDSSVVL*NIDIISICFLLKK*FQYTNS 19
           GD  N  T    H D  D+D S+ +     +++ F LK   Q+T +
Sbjct: 173 GDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLTFSLKYLAQFTKA 218


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 14  YSLFVYWNHFF 46
           Y LF Y NHF+
Sbjct: 91  YELFTYLNHFY 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,792
Number of Sequences: 5004
Number of extensions: 9774
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)