Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l06
         (187 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   1.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   1.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   1.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    19   4.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    19   4.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   5.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    18   9.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -2

Query: 186 SLKNIS----KASIISGDCENTPPHSHRD 112
           ++KNIS    +   ++GD +N PP    D
Sbjct: 311 NVKNISVKELRRGYVAGDSKNQPPRGAAD 339


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -2

Query: 186 SLKNIS----KASIISGDCENTPPHSHRD 112
           ++KNIS    +   ++GD +N PP    D
Sbjct: 22  NVKNISVKELRRGYVAGDSKNQPPRGAAD 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -2

Query: 186 SLKNIS----KASIISGDCENTPPHSHRD 112
           ++KN+S    +   ++GD +N PP    D
Sbjct: 311 NVKNVSVKELRRGYVAGDSKNNPPKGAAD 339


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 100 FIPSITM*VWWCIFTVTTNDGC 165
           +IP +   V  C   VT+ +GC
Sbjct: 104 YIPRVESVVETCKKEVTSTEGC 125


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 100 FIPSITM*VWWCIFTVTTNDGC 165
           +IP +   V  C   VT+ +GC
Sbjct: 78  YIPRVESVVETCKKEVTSTEGC 99


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 91  TAIFIPSITM*VWWCIFTVTTNDGC 165
           T +  PSIT+ V   I  V +  GC
Sbjct: 46  TGLAFPSITLIVLGSIIFVISFFGC 70


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 70  HNFNLLSTEEMI 35
           HN N ++TE+ +
Sbjct: 271 HNLNYVNTEQFV 282


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = +3

Query: 18  HYLYIGIISSVESKLKLCQYFIVQHCYLYPI 110
           +Y YIG+++ V + +     ++ +   +Y I
Sbjct: 640 YYSYIGVLTLVATSMPTYICYLGKAYLMYAI 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,176
Number of Sequences: 438
Number of extensions: 812
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)