Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12l04
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0078 + 12657239-12658324                                         25   9.0  
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330...    25   9.0  

>10_07_0078 + 12657239-12658324
          Length = 361

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 135 QRPEQYMQXLQGTCSSPAXAWLTRKP 212
           QR E+Y     G+CS+ +  W  + P
Sbjct: 92  QRRERYASPYPGSCSNSSLLWCLQDP 117


>04_03_0068 -
           10631827-10631947,10632037-10632112,10632152-10633021,
           10650975-10651599
          Length = 563

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 69  MRSMQPENMXSTQSTPGVRCTXQRPEQYMQXLQGTCSSPAXAWLTRKPGE 218
           M+S+   ++   Q+   V    + PE + + ++    +P    LT+KP E
Sbjct: 187 MKSIADGSIAGHQAAGPVYLQGENPEAFFRSVRPQVVAPQKTLLTKKPAE 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,898,195
Number of Sequences: 37544
Number of extensions: 42790
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)