Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l03
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 50 2e-07
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 44 2e-05
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 2.0
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 3.5
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 4.6
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 26 4.6
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.1
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 6.1
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 6.1
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib... 25 8.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 8.1
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 8.1
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 50.4 bits (115), Expect = 2e-07
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Frame = -2
Query: 695 SMVESXRKNERIHLDIDSTIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIX 516
++ +S + +R+ L A+G AV +VG T + +D +V+V +D + AI +
Sbjct: 303 ALKKSLKDKKRVTLKEVGLFADGTAVKLVGEETFRLVSKNIDDVVLVDKDEICAAIKDVF 362
Query: 515 XXXXXXXXXXXXXXXXAI---MAGLFPNLKGKKVVCIISGGNIDVTILARALERGMAAEG 345
+ +A P VCI+SG N+D L ER
Sbjct: 363 LDTRSVVEPSGAMAVAGMKRYVAKHKPKNPNAAQVCILSGANMDFDRLRFIAERADLGLN 422
Query: 344 RLVKFKVTVHDRPGGMAELCTLLTNSGIT 258
+ V VT+ +RPG L ++T IT
Sbjct: 423 KEVFLSVTIPERPGSFEALHNIITPRSIT 451
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 44.4 bits (100), Expect = 2e-05
Identities = 31/108 (28%), Positives = 47/108 (43%)
Frame = -2
Query: 686 ESXRKNERIHLDIDSTIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXX 507
+S RK +H+D TIA+G +G T IK VD I+ V ++ + +
Sbjct: 217 QSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARM 276
Query: 506 XXXXXXXXXXXXXAIMAGLFPNLKGKKVVCIISGGNIDVTILARALER 363
A A + LK K++ IISGGN+D+ A L +
Sbjct: 277 KIVVEPTGCLSFAAARA-MKEKLKNKRIGIIISGGNVDIERYAHFLSQ 323
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 250 SRIVIPELVRSVHSSAMPPGRSWTV-TL-NFTNR 345
+++V+P L S SS PP +S+ + TL NF NR
Sbjct: 568 TQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNR 601
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 268 ELVRSVHSSAMPPGRSWTVTLNFTNRPSAAIPRSNARARIVTSIL 402
EL ++ S++ + LN N P AA P SN + VTSIL
Sbjct: 761 ELAQNKQQSSVTTASPRSNALN-ANTPKAAAPSSNVTMKNVTSIL 804
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 3.5
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 169 SQPLVSAIT-LTWALNTSPLTQARSGTQSRIVIPELVRSVHSSAM-PPGRSWTVTLNFTN 342
SQ L++A +T LNTSPL + +S V P +S + PP + + N
Sbjct: 585 SQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLSSSKDAN 644
Query: 343 RPSAAIPRSNARARI 387
R PR + R+
Sbjct: 645 RSVPESPRREKKNRV 659
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 293 ELCTLLTNSGITIRDCVPERA-WVKGDVFSAQVKVIAETRGWEHTKELIEQIKKHYK 126
E+ LL N+ +RD + A V +V + +K+ A+ R +ELI I KH K
Sbjct: 179 EMFFLLLNNASALRDISQKHAAHVVINVTNNNIKIEAKKRDVAIVEELISGIFKHLK 235
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 158 ELIEQIKKHYKDYXFQEICDRPD 90
E+ +K +Y Y +EIC++PD
Sbjct: 328 EIASVMKGNYDHYMIKEICEQPD 350
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 507 LLFYYMHDGPSHPIFLYNHYFVYKTF 584
LL ++D S+ I+LY Y +YKT+
Sbjct: 9 LLDELLNDSSSNMIWLYEVYMLYKTY 34
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 247 QSRIVIPELVRSVHSSAMPPGRSWTVTLNFTNRPS 351
++R ++PE R HSS +PP ++ + N PS
Sbjct: 100 ETRPLLPE--REEHSSQLPPAQNQVLPFQSLNAPS 132
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 423 DFLSFKIGEQSRHNGGNGHSA--GTFHDKSLLFYYMHDGPSHPI 548
DF + +G + N G G S GT HD F DG +H +
Sbjct: 2 DFANVYLGLDTLGNEGYGASVSNGTHHDFHFNFNTFRDGGNHEV 45
>SPBC29A3.02c |his7||phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
His7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 283 VHSSAMPPGRSWTVTLNFTNRPSAAIPRS 369
+H + MP G T+ L F +PS + +S
Sbjct: 139 IHKAVMPEGGGRTLYLEFPEQPSMEVLKS 167
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/88 (19%), Positives = 35/88 (39%)
Frame = +1
Query: 175 PLVSAITLTWALNTSPLTQARSGTQSRIVIPELVRSVHSSAMPPGRSWTVTLNFTNRPSA 354
P+ + T T+P+ + + +I +V ++ + GRS T+ T A
Sbjct: 194 PMAAMTTPMEETTTTPMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEA 253
Query: 355 AIPRSNARARIVTSILPPEIMXTTFFPL 438
I + + T+ + + TT P+
Sbjct: 254 MITPTVETTTLPTAAMTTPVEETTTTPM 281
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 535 RATQSSFTTTILSTRPLILXNVFVPTTFTAXPSAIVESMSK 657
R T TTT+L+ RP++ ++F+ +A + + + K
Sbjct: 481 RNTAEYITTTLLAIRPMVRASLFIGQANSAYSTGMNQMQQK 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,279
Number of Sequences: 5004
Number of extensions: 59364
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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