Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l03
(711 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457300-1|CAG33581.1| 340|Homo sapiens SRR protein. 35 0.25
BC074728-1|AAH74728.1| 340|Homo sapiens serine racemase protein. 35 0.25
AY034081-1|AAK58495.1| 340|Homo sapiens serine racemase protein. 35 0.25
AL834378-1|CAD39041.1| 288|Homo sapiens hypothetical protein pr... 35 0.25
AK223120-1|BAD96840.1| 340|Homo sapiens serine racemase variant... 35 0.25
AK023169-1|BAB14442.1| 340|Homo sapiens protein ( Homo sapiens ... 35 0.25
AF169974-1|AAG27081.1| 340|Homo sapiens serine racemase protein. 35 0.25
AY358101-1|AAQ88468.1| 85|Homo sapiens Wpep3002 protein. 31 4.1
>CR457300-1|CAG33581.1| 340|Homo sapiens SRR protein.
Length = 340
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 235 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 293
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 294 LSQHFQTVSPEVKNICIVLSGGNVDLT 320
>BC074728-1|AAH74728.1| 340|Homo sapiens serine racemase protein.
Length = 340
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 235 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 293
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 294 LSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AY034081-1|AAK58495.1| 340|Homo sapiens serine racemase protein.
Length = 340
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 235 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 293
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 294 LSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AL834378-1|CAD39041.1| 288|Homo sapiens hypothetical protein
protein.
Length = 288
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 183 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 241
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 242 LSQHFQTVSPEVKNICIVLSGGNVDLT 268
>AK223120-1|BAD96840.1| 340|Homo sapiens serine racemase variant
protein.
Length = 340
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 235 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 293
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 294 LSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AK023169-1|BAB14442.1| 340|Homo sapiens protein ( Homo sapiens
cDNA FLJ13107 fis, clone NT2RP3002501, weakly similar to
THREONINE DEHYDRATASE CATABOLIC (EC 4.2.1.16). ).
Length = 340
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 235 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 293
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 294 LSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AF169974-1|AAG27081.1| 340|Homo sapiens serine racemase protein.
Length = 340
Score = 35.1 bits (77), Expect = 0.25
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -2
Query: 641 TIAEGXAVNVVGTNTXYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI 462
TIA+G ++ G NT I+ LVD I V ED + A + A+
Sbjct: 235 TIADGVKSSI-GLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAV 293
Query: 461 MAGLFPNLKGK-KVVCII-SGGNIDVT 387
++ F + + K +CI+ SGGN+D+T
Sbjct: 294 LSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AY358101-1|AAQ88468.1| 85|Homo sapiens Wpep3002 protein.
Length = 85
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 530 WPEPPNLPLQPLFCLQDL 583
WPEPP PL PL CL L
Sbjct: 2 WPEPPLGPLSPLLCLLSL 19
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,602,175
Number of Sequences: 237096
Number of extensions: 2414751
Number of successful extensions: 4873
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4855
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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