Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12l03
(711 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 25 0.71
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 24 1.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 24 1.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 24 1.6
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 24 1.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 24 1.6
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 24 1.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 24 1.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.9
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 2.9
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 2.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 5.0
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 6.6
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 6.6
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 6.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.6
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 6.6
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 6.6
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 6.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 6.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 6.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 6.6
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 6.6
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 25.0 bits (52), Expect = 0.71
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 316 WTVTLNFTNRPSAAIPRSNARARIVT 393
WT T+ +N PS+AI +N + +V+
Sbjct: 98 WTPTVYVSNEPSSAITGNNVKDVLVS 123
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 112 KKYATGPTGLRSESRSWALFSTESC 38
KKYA LRS SRS+ T SC
Sbjct: 208 KKYAISSNSLRSRSRSFQ--RTSSC 230
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 618 KRGRNKHIXQYQRSCRQNSGCKGRLGGSGHHA 523
++ R + I + ++ R+N G G G G HA
Sbjct: 314 RKNRFQKIAESMKTARENPGPPGVPGDHGDHA 345
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 618 KRGRNKHIXQYQRSCRQNSGCKGRLGGSGHHA 523
++ R + I + ++ R+N G G G G HA
Sbjct: 314 RKNRFQKIAESMKTARENPGPPGVPGDHGDHA 345
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 618 KRGRNKHIXQYQRSCRQNSGCKGRLGGSGHHA 523
++ R + I + ++ R+N G G G G HA
Sbjct: 253 RKNRFQKIAESMKTARENPGPPGVPGDHGDHA 284
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 356 AAEGRLVKFKVTVHDRPGGMAELCTLLTNSGITI 255
AA G + +KV V GG+ T +T+S TI
Sbjct: 1109 AANGVITGYKVIVIPSGGGIYTKDTKITSSSETI 1142
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 196 SKKYATSSNSLRSRTHGF 213
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 196 SKKYATSSNSLRSRTHGF 213
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 196 SKKYATSSNSLRSRTHGF 213
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHGF 224
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 115 SKKYATGPTGLRSESRSW 62
SKKYAT LRS + +
Sbjct: 207 SKKYATSSNSLRSRTHDF 224
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,900
Number of Sequences: 438
Number of extensions: 4534
Number of successful extensions: 40
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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