Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k23
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    31   0.24 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   0.32 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    29   0.74 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.3  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   6.9  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.9  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.1  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 400  DVAAELIHTIWNPCVYSCVSRDIFVTYHL-DSLPSLLRCF-*GFMTCCALNEV*GEFPAL 227
            D+ + + ++ WN C+   + R+    YH+ D   +L  C+    +  CAL+    EF  L
Sbjct: 1250 DLGSAIFYSAWNQCIAEVIRRNPIDIYHINDYHGALAPCYLLPDIIPCALSLHNAEFQGL 1309

Query: 226  W 224
            W
Sbjct: 1310 W 1310


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 400  DVAAELIHTIWNPCVYSCVSRDIFVTYHLD 311
            D+++ + ++ WN C+ S +SR+    YH++
Sbjct: 1252 DLSSAIFYSAWNQCIASVISRNNIDLYHMN 1281


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 400 DVAAELIHTIWNPCVYSCVSRDIFVTYHLDSLPSLLRCF*GF--MTCCALNEV*GEFPAL 227
           D+++ + +++WN  + + + R+    YH++     L        +  CA++    EF  L
Sbjct: 361 DISSAIFYSVWNQSIAAIIRREKVDIYHINDYHGALAPIYNLPEVIPCAISLHNAEFQGL 420

Query: 226 WTSQ 215
           W  Q
Sbjct: 421 WPLQ 424


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 400  DVAAELIHTIWNPCVYSCVSRDIFVTYHL-DSLPSLLRCF-*GFMTCCALNEV*GEFPAL 227
            D+++ + ++ WN C+   + R     YH+ D   +L  C+    +  C L+    EF  L
Sbjct: 1245 DLSSAIFYSAWNQCIAGIIRRYPIDVYHINDYHGALAPCYLLPNVIPCVLSLHNAEFQGL 1304

Query: 226  W 224
            W
Sbjct: 1305 W 1305


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 421 DHLKQFLRDFLFSISFDYCCDYHLLYEKRKLLKSCRRQPVIP*SNFMNSTSAIPILK 591
           DHL   LR    S++  Y  +  +LY      + C  Q VI  +N  ++   I  +K
Sbjct: 409 DHLYDSLRLLAISVTMKYVRNQTILYVNLHDKRKCLLQGVIELTNLGHNLELINFIK 465


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 487 HLLYEKRKLLKSCRRQPVIP*SNFMNSTSAIPILKLLNCKVSSKSSP 627
           H+ YE+  L++  R QP++   NF + +++  +    N  ++ K  P
Sbjct: 216 HIFYEQVSLIRLERTQPILHLMNFDDYSTSYELFYDRNFPLAKKYKP 262


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = +1

Query: 436 FLRDFLFSISFDYCCDYHLLYEKRKLLKSCRRQPVIP*SNFMNSTSAIPILKLLNCKVSS 615
           F  D  FS+S     +    Y K  L K  R     P  +  ++  + P    L   + S
Sbjct: 162 FEEDNFFSVSPKRRKNLFEKYGKTDLGKPARVPS--PKKSLSSTIKSPPSRVKLPTSILS 219

Query: 616 KSSPLVFA*KNKKNQFNPTSFPIS 687
           KS PL    KN+ + F+P   P S
Sbjct: 220 KSPPLKVPNKNRSSTFSPLRTPTS 243


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 400  DVAAELIHTIWNPCVYSCVSRDIFVTYHLD 311
            D+A+ + +++WN C+     R     YH++
Sbjct: 1278 DLASAIFYSVWNQCIAEVWKRFPLDIYHVN 1307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,284
Number of Sequences: 5004
Number of extensions: 66377
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)