Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k23
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 464 EILKRKSLRNCLR*SSYHHTVRRRSRVNP 378
           E++K K+  NC +  +YH  +   SR+ P
Sbjct: 212 EVIKIKNFDNCDQRINYHFGMTDNSRLEP 240


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 382 IHTIWNPCVYSCVSRD 335
           I++  NP +Y+C SRD
Sbjct: 381 INSGMNPVIYACWSRD 396


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 653 FLFFQAKTNGLDFD 612
           F F +  TN LDFD
Sbjct: 15  FFFIEGMTNVLDFD 28


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 367 NPCVYSCVSRD 335
           NPC+Y+  S+D
Sbjct: 58  NPCIYALFSKD 68


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 367 NPCVYSCVSRD 335
           NPC+Y+  S+D
Sbjct: 506 NPCIYALFSKD 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,993
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)