Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k22
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    24   6.2  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    24   8.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    24   8.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    24   8.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    24   8.2  

>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 311 EMNLGKTNIIARFLY 267
           E ++GKT++I RF+Y
Sbjct: 19  EQSVGKTSLITRFMY 33


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 296 KTNIIARFLY*CALINSLRRCIMRLMIIQVINIMTITC 183
           +TN    F+  CAL   + R + + ++I+ I+I+   C
Sbjct: 175 RTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALC 212


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 296 KTNIIARFLY*CALINSLRRCIMRLMIIQVINIMTITC 183
           +TN    F+  CAL   + R + + ++I+ I+I+   C
Sbjct: 175 RTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALC 212


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 296 KTNIIARFLY*CALINSLRRCIMRLMIIQVINIMTITC 183
           +TN    F+  CAL   + R + + ++I+ I+I+   C
Sbjct: 147 RTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALC 184


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 296 KTNIIARFLY*CALINSLRRCIMRLMIIQVINIMTITC 183
           +TN    F+  CAL   + R + + ++I+ I+I+   C
Sbjct: 175 RTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALC 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,720
Number of Sequences: 5004
Number of extensions: 17065
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)