Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k18
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    39   0.001
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    30   0.48 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   2.5  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   7.8  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    26   7.8  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   7.8  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -1

Query: 779 APKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 600
           +P  I NP + G W   +I NP+Y  D +      +  VG +LW ++    F +  +   
Sbjct: 350 SPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNIYVGHS 409

Query: 599 PAAAKERG-EVIKKRQEGEKKM 537
              A+  G E    + + E+++
Sbjct: 410 IEDAERLGNETFLPKLKAEREL 431



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 831 GEWEPPMIDNPDYKGVW 781
           GEW+PPMI NP+Y+G W
Sbjct: 333 GEWKPPMIRNPNYRGPW 349



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 776 PKQIDNPAYKGPWVHPEIDNPEY 708
           P  I NP Y+GPW  P I NPE+
Sbjct: 337 PPMIRNPNYRGPWSPPMIPNPEF 359



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 831 GEWEPPMIDNPDYKGVW 781
           G W PPMI NP++ G W
Sbjct: 347 GPWSPPMIPNPEFIGEW 363



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 840 EMDGEWEPPMIDNPDY 793
           E  GEW P  I NPDY
Sbjct: 358 EFIGEWYPRKIPNPDY 373


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 339 LHARTLRTPRYLMSWHSLINHNSLQLI 419
           LH  +L T RY MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 126 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPYESVK 245
           +N+K    S L++  I+   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 641 KSGTIF-DDFLITDDPAAAKERGEVIKKRQEG 549
           KS T+F D+  IT  PA+ K+R    KK+  G
Sbjct: 20  KSETVFLDEAAITKPPASKKKRKNRKKKKNNG 51


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 782 GAPK-QIDNPAYKGPWVHPEIDNP 714
           G PK  +D  +Y G W  P+ D+P
Sbjct: 132 GEPKFNVDGTSYDGDWGRPQNDSP 155


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 379 DIKYLGVRSVRAWRILFLKPLVAQSSTIP 293
           D+K  GV   RA R+L L  +V   +T+P
Sbjct: 347 DVKSKGVDGARAERVLELINIVTNKNTVP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,724
Number of Sequences: 5004
Number of extensions: 64108
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)