Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k16
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    27   0.27 
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    26   0.36 
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    26   0.36 
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    26   0.36 
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    26   0.36 
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    26   0.36 
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    26   0.36 
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    26   0.36 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   4.4  

>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I I
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPI 121


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 SMINNYNWMRYIRYPISKSI*SYKNINKYQIIY*KEIAI 625
           S+ NNYN+  Y  Y  + +  +YK +  Y I Y ++I +
Sbjct: 84  SLSNNYNYSNYNNYNNNNNYNNYKKL-YYNINYIEQIPV 121


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 461 HRVEIIVENIQCSPVDKTLILKFLCTCN 544
           H +EI+  N+Q  PV+    L  L T N
Sbjct: 150 HTLEIVESNVQALPVNSLCSLDNLQTLN 177


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 CYAACILKVQNVFK 312
           CY  CI+K+   FK
Sbjct: 67  CYTTCIMKLLRTFK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,195
Number of Sequences: 438
Number of extensions: 4438
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)