Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k14
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    46   6e-06
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    33   0.045
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    27   2.9  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   5.1  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.1  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   9.0  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 47/184 (25%), Positives = 78/184 (42%)
 Frame = -2

Query: 757 YLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAKS 578
           Y++++KP  + ++       NTV + + +           L+   RLD  TSG++  +KS
Sbjct: 114 YVVIDKPAGVPVHPTGRYNHNTVLHILMK-----ENKCSLLYPCNRLDRLTSGLMFFSKS 168

Query: 577 RPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTSSSQ 398
             AA         +  +K Y+A V G   F  +     V  D   L      +A T    
Sbjct: 169 PKAAEEMRVHMISKSLKKEYVARVIGE--FPNSGE---VICDAPLL-----TVAPTLGLN 218

Query: 397 TIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYSDRS 218
            I     +   +     +   +  S++L KP+TGR HQLRVH   +G+ I  D  Y+++ 
Sbjct: 219 RIHPDGKEASTVFKRIAFDGHT--SLVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKR 276

Query: 217 DCSP 206
              P
Sbjct: 277 VWGP 280


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = -2

Query: 562 SAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPE---------TLHSNHKMLART 410
           S+ KA  K + RKY+  +  G+VG+ + D + GV    +          L SNH+     
Sbjct: 301 SSSKADNKAIWRKYWFFVDNGYVGYLINDANGGVFESEKIGVLLCKFSVLPSNHRKFCFQ 360

Query: 409 SSSQTIQ-VRSAQTRMLLLETG 347
             ++++  +  A+T M +LE G
Sbjct: 361 IKTKSVSYILQAETHMEMLEWG 382


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 433 SSAGFQGLRQRHNQHRPAQSQHVRGRSPGSISWSISFRTLCQRWPQLADSW 585
           SS+      ++  +H PA S+H    +P S + S+S  T  +R   +A S+
Sbjct: 242 SSSLISSFSEQPKEHSPATSKHEPEETPASPTPSVSASTSRERSTSVAPSF 292


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 277 PSADGDDQL*ASVGVQTQDSVGTSPSPRAASWSERCELVSFEMKMFAPA 423
           P   G  Q  ++  + TQ+ +   P P     S   E V  E K ++P+
Sbjct: 119 PPISGHVQAISNTPIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYSPS 167


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 323 CTPTEAYNWSSPSAE-GPL*RNRPHYTGRL 237
           C P E +NW  P+ +  PL +NR  +  +L
Sbjct: 474 CLPEEGHNWKVPADKTHPLWKNRKDFRDKL 503


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +1

Query: 514 PGSISWSISFRTLCQRWPQLADSWPC----RARHSWRSP 618
           PG ++W++    +CQ +P    S       R  H W  P
Sbjct: 230 PGGVAWAMMVARICQLYPNAVSSVIVAKFFRILHQWNWP 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,937
Number of Sequences: 5004
Number of extensions: 73717
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)