Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12k14
(764 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011783-1|AAH11783.1| 312|Homo sapiens RNA pseudouridylate syn... 146 1e-34
AL031033-1|CAB53055.1| 312|Homo sapiens RNA pseudouridylate syn... 146 1e-34
AE006465-1|AAK61255.1| 312|Homo sapiens ribosomal large subunit... 146 1e-34
BC012951-1|AAH12951.2| 190|Homo sapiens RPUSD1 protein protein. 91 3e-18
BC014131-1|AAH14131.1| 377|Homo sapiens RNA pseudouridylate syn... 65 3e-10
AK027400-1|BAB55086.1| 377|Homo sapiens protein ( Homo sapiens ... 65 3e-10
BC016967-1|AAH16967.2| 545|Homo sapiens RNA pseudouridylate syn... 56 2e-07
BC007697-1|AAH07697.1| 554|Homo sapiens RPUSD2 protein protein. 56 2e-07
AK055971-1|BAB71059.1| 545|Homo sapiens protein ( Homo sapiens ... 56 2e-07
U67934-1|AAB07777.1| 189|Homo sapiens 44.9 kDa protein C18B11 h... 42 0.002
>BC011783-1|AAH11783.1| 312|Homo sapiens RNA pseudouridylate
synthase domain containing 1 protein.
Length = 312
Score = 146 bits (353), Expect = 1e-34
Identities = 82/216 (37%), Positives = 124/216 (57%), Gaps = 4/216 (1%)
Frame = -2
Query: 760 DYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLST--SSQPLHFVQRLDYATSGVLCM 587
D+L+VNK +D+ I+S E T+ Q+ L+ + F +LD++TSG LC+
Sbjct: 17 DFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDFSTSGALCV 76
Query: 586 AKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTS 407
A ++ AA SA + F++R K YLA++RGH+ + + +G + T H M S
Sbjct: 77 ALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRN-STEGRAHTMCIEGS 135
Query: 406 SSQTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
+ + T +++LE G Y PVS +LLKP+TGR HQLRVHC+A+GH ++GD TY
Sbjct: 136 QGCE-NPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYG 194
Query: 226 DRS--DCSPHRMFLHASRLVLPVDKEVIDVQTKTPY 125
+ S + P RM LHA L +P D E ++V T P+
Sbjct: 195 EVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPF 230
>AL031033-1|CAB53055.1| 312|Homo sapiens RNA pseudouridylate
synthase domain containing 1 protein.
Length = 312
Score = 146 bits (353), Expect = 1e-34
Identities = 82/216 (37%), Positives = 124/216 (57%), Gaps = 4/216 (1%)
Frame = -2
Query: 760 DYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLST--SSQPLHFVQRLDYATSGVLCM 587
D+L+VNK +D+ I+S E T+ Q+ L+ + F +LD++TSG LC+
Sbjct: 17 DFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDFSTSGALCV 76
Query: 586 AKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTS 407
A ++ AA SA + F++R K YLA++RGH+ + + +G + T H M S
Sbjct: 77 ALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRN-STEGRAHTMCIEGS 135
Query: 406 SSQTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
+ + T +++LE G Y PVS +LLKP+TGR HQLRVHC+A+GH ++GD TY
Sbjct: 136 QGCE-NPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYG 194
Query: 226 DRS--DCSPHRMFLHASRLVLPVDKEVIDVQTKTPY 125
+ S + P RM LHA L +P D E ++V T P+
Sbjct: 195 EVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPF 230
>AE006465-1|AAK61255.1| 312|Homo sapiens ribosomal large subunit
pseudouridine synthase C like protein.
Length = 312
Score = 146 bits (353), Expect = 1e-34
Identities = 82/216 (37%), Positives = 124/216 (57%), Gaps = 4/216 (1%)
Frame = -2
Query: 760 DYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLST--SSQPLHFVQRLDYATSGVLCM 587
D+L+VNK +D+ I+S E T+ Q+ L+ + F +LD++TSG LC+
Sbjct: 17 DFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDFSTSGALCV 76
Query: 586 AKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTS 407
A ++ AA SA + F++R K YLA++RGH+ + + +G + T H M S
Sbjct: 77 ALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRN-STEGRAHTMCIEGS 135
Query: 406 SSQTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
+ + T +++LE G Y PVS +LLKP+TGR HQLRVHC+A+GH ++GD TY
Sbjct: 136 QGCE-NPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYG 194
Query: 226 DRS--DCSPHRMFLHASRLVLPVDKEVIDVQTKTPY 125
+ S + P RM LHA L +P D E ++V T P+
Sbjct: 195 EVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPF 230
>BC012951-1|AAH12951.2| 190|Homo sapiens RPUSD1 protein protein.
Length = 190
Score = 91.5 bits (217), Expect = 3e-18
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = -2
Query: 373 TRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYSDRS--DCSPHR 200
T +++LE G Y PVS +LLKP+TGR HQLRVHC+A+GH ++GD TY + S + P R
Sbjct: 24 TDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFR 83
Query: 199 MFLHASRLVLPVDKEVIDVQTKTPY 125
M LHA L +P D E ++V T P+
Sbjct: 84 MMLHAFYLRIPTDTECVEVCTPDPF 108
>BC014131-1|AAH14131.1| 377|Homo sapiens RNA pseudouridylate
synthase domain containing 4 protein.
Length = 377
Score = 64.9 bits (151), Expect = 3e-10
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 9/195 (4%)
Frame = -2
Query: 754 LIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAKSR 575
+++NKPY + ++ + ++PLH RLD T+GV+ +A +
Sbjct: 107 VVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDK 166
Query: 574 PAAASAGKAFEKRLTRKYYLAIVRGHVGFELAD-VDYG-VGADPETLHSNHKMLA----R 413
A + F R K Y AI HV A VD V + + +HKM R
Sbjct: 167 DMAHQVQELFRTRQVVKKYWAIT-VHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYR 225
Query: 412 TSSSQTIQVRSAQTRMLLLETGWYQRSPVSVLL--LKPITGRRHQLRVHCN-AIGHTILG 242
+ ++VR ++ + + S +S L L+PITG +HQLRVH + + ILG
Sbjct: 226 MDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILG 285
Query: 241 DYTYSDRSDCSPHRM 197
D+ YSD + +P ++
Sbjct: 286 DHKYSDWNRLAPQKL 300
>AK027400-1|BAB55086.1| 377|Homo sapiens protein ( Homo sapiens
cDNA FLJ14494 fis, clone MAMMA1003035, weakly similar to
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C (EC
4.2.1.70). ).
Length = 377
Score = 64.9 bits (151), Expect = 3e-10
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 9/195 (4%)
Frame = -2
Query: 754 LIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAKSR 575
+++NKPY + ++ + ++PLH RLD T+GV+ +A +
Sbjct: 107 VVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDK 166
Query: 574 PAAASAGKAFEKRLTRKYYLAIVRGHVGFELAD-VDYG-VGADPETLHSNHKMLA----R 413
A + F R K Y AI HV A VD V + + +HKM R
Sbjct: 167 DMAHQVQELFRTRQVVKKYWAIT-VHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYR 225
Query: 412 TSSSQTIQVRSAQTRMLLLETGWYQRSPVSVLL--LKPITGRRHQLRVHCN-AIGHTILG 242
+ ++VR ++ + + S +S L L+PITG +HQLRVH + + ILG
Sbjct: 226 MDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILG 285
Query: 241 DYTYSDRSDCSPHRM 197
D+ YSD + +P ++
Sbjct: 286 DHKYSDWNRLAPQKL 300
>BC016967-1|AAH16967.2| 545|Homo sapiens RNA pseudouridylate
synthase domain containing 2 protein.
Length = 545
Score = 55.6 bits (128), Expect = 2e-07
Identities = 50/178 (28%), Positives = 77/178 (43%)
Frame = -2
Query: 760 DYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAK 581
D ++V+KP + ++ NTV + + + H PLH RLD TSGVL AK
Sbjct: 231 DVVVVDKPSSIPVHPCGRFRHNTVIFILGK--EHQLKELHPLH---RLDRLTSGVLMFAK 285
Query: 580 SRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTSSS 401
+ + + R K Y+ V G F +V +P + S + R
Sbjct: 286 TAAVSERIHEQVRDRQLEKEYVCRVEGE--FPTEEVTC---KEPILVVSYKVGVCR---- 336
Query: 400 QTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
+ R + + +S SV+ +P+TGR HQ+RVH +GH IL D Y+
Sbjct: 337 --VDPRGKPCETVFQRLSYNGQS--SVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN 390
>BC007697-1|AAH07697.1| 554|Homo sapiens RPUSD2 protein protein.
Length = 554
Score = 55.6 bits (128), Expect = 2e-07
Identities = 50/178 (28%), Positives = 77/178 (43%)
Frame = -2
Query: 760 DYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAK 581
D ++V+KP + ++ NTV + + + H PLH RLD TSGVL AK
Sbjct: 240 DVVVVDKPSSIPVHPCGRFRHNTVIFILGK--EHQLKELHPLH---RLDRLTSGVLMFAK 294
Query: 580 SRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTSSS 401
+ + + R K Y+ V G F +V +P + S + R
Sbjct: 295 TAAVSERIHEQVRDRQLEKEYVCRVEGE--FPTEEVTC---KEPILVVSYKVGVCR---- 345
Query: 400 QTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
+ R + + +S SV+ +P+TGR HQ+RVH +GH IL D Y+
Sbjct: 346 --VDPRGKPCETVFQRLSYNGQS--SVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN 399
>AK055971-1|BAB71059.1| 545|Homo sapiens protein ( Homo sapiens
cDNA FLJ31409 fis, clone NT2NE2000174. ).
Length = 545
Score = 55.6 bits (128), Expect = 2e-07
Identities = 50/178 (28%), Positives = 77/178 (43%)
Frame = -2
Query: 760 DYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAK 581
D ++V+KP + ++ NTV + + + H PLH RLD TSGVL AK
Sbjct: 231 DVVVVDKPSSIPVHPCGRFRHNTVIFILGK--EHQLKELHPLH---RLDRLTSGVLMFAK 285
Query: 580 SRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTSSS 401
+ + + R K Y+ V G F +V +P + S + R
Sbjct: 286 TAAVSERIHEQVRDRQLEKEYVCRVEGE--FPTEEVTC---KEPILVVSYKVGVCR---- 336
Query: 400 QTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
+ R + + +S SV+ +P+TGR HQ+RVH +GH IL D Y+
Sbjct: 337 --VDPRGKPCETVFQRLSYNGQS--SVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN 390
>U67934-1|AAB07777.1| 189|Homo sapiens 44.9 kDa protein C18B11
homolog protein.
Length = 189
Score = 41.9 bits (94), Expect = 0.002
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = -2
Query: 325 SVLLLKPITGRRHQLRVHCNAIGHTILGDYTYS 227
SV+ +P+TGR HQ+RVH +GH IL D Y+
Sbjct: 25 SVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,272,410
Number of Sequences: 237096
Number of extensions: 2733311
Number of successful extensions: 11282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11268
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -