Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k14
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.19 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +1

Query: 271 SGPSADGDDQL*ASVGVQTQDSVGTSPSPRAASWSERCELVSFEMKMFAPASCDSSAGFQ 450
           S  S+ G++   A++ ++ + +  +S  P  AS               +P    S+AGF 
Sbjct: 255 SSTSSGGNED--ANLLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGFL 312

Query: 451 GLRQRHNQHRPAQSQHVRGRSP 516
                 +QH P+Q    RG SP
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSP 334



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 451 GLRQRHNQHRPAQSQHVRGRSPGSISWSIS 540
           G    H+ H+    QH+  R P ++S S S
Sbjct: 348 GPPHHHHHHQTQSLQHLHYRQPPTLSESYS 377


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 675 RVAILICQRHRNLYISSNDWTTPR 604
           R++ +I  RHRNL  + ++   PR
Sbjct: 220 RISCVIASRHRNLEATESENVRPR 243


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/53 (26%), Positives = 19/53 (35%)
 Frame = -1

Query: 317 PTEAYNWSSPSAEGPL*RNRPHYTGRLHLQRQVGLFSTPHVSPRFQASFTSRQ 159
           PT    W  P  E PL   +PH        + + L + P  S     S   +Q
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSATPADQPLDLSAKPKNSQDNNISLLEQQ 533



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 533 QSLFERFASAGRSWPTLGHA 592
           ++L +R    G  WP L HA
Sbjct: 739 RTLLQRGQETGAEWPGLEHA 758


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 58  LWFCKGTLPDQTSSAGGSLHRKSKG 132
           L + K  LP+  S AG + ++ +KG
Sbjct: 47  LTYAKNILPNNISIAGQNTYKVAKG 71


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 744 TSLMTCISILMTKTKRTQWL 685
           T+ +T   +LMT T  T WL
Sbjct: 248 TTYVTLTIVLMTMTLMTLWL 267


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 661 ENRNALFGKPLCSFRFRHQN*YTCHKA 741
           E  + L+    C+ R+R +N  T HK+
Sbjct: 30  EQSDTLYVCEFCNRRYRTKNSLTTHKS 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,731
Number of Sequences: 438
Number of extensions: 4906
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)