Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k11
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    33   0.065
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   1.1  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   9.9  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -1

Query: 561 CILVLMLYT--LFIGVCQMS--MKTLFCGILLRH 472
           CI++LM YT   F   C MS  +  LFCGI L+H
Sbjct: 269 CIILLMAYTSYFFSNGCHMSGVVSLLFCGITLKH 302


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 136 KCFDAQDVPMLQATIAKIPQEEAIYYMNRC-IASGLWVPGKNDEEPTMKDSKTEKHSGET 312
           +C DAQD+   +     + + EA Y   R      +W  G  + +PT+  S T  +S E+
Sbjct: 176 QCHDAQDIQEKEKKY--LEEMEASYQEQRNQTTDDIWSAGNLNHKPTLNTSSTHSNSEES 233


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 440 KKPC*YYFYNKCLRS 484
           K PC +YF+N CL S
Sbjct: 53  KIPCGHYFHNHCLES 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,746
Number of Sequences: 5004
Number of extensions: 71366
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)