Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12k11
(828 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U63131-1|AAB04798.1| 378|Homo sapiens CDC37 homolog protein. 60 1e-08
U43077-1|AAB63979.1| 378|Homo sapiens CDC37 homolog protein. 60 1e-08
BT006796-1|AAP35442.1| 378|Homo sapiens CDC37 cell division cyc... 60 1e-08
BC141929-1|AAI41930.1| 110|Homo sapiens CDC37 protein protein. 60 1e-08
BC141928-1|AAI41929.1| 110|Homo sapiens CDC37 protein protein. 60 1e-08
BC127213-1|AAI27214.1| 110|Homo sapiens MBD5 protein protein. 60 1e-08
BC127212-1|AAI27213.1| 110|Homo sapiens MBD5 protein protein. 60 1e-08
BC008793-1|AAH08793.1| 378|Homo sapiens cell division cycle 37 ... 60 1e-08
BC000083-1|AAH00083.1| 378|Homo sapiens cell division cycle 37 ... 60 1e-08
AY864824-1|AAW34362.1| 378|Homo sapiens CDC37 cell division cyc... 60 1e-08
CR542249-1|CAG47045.1| 378|Homo sapiens CDC37 protein. 59 2e-08
AB065885-1|BAC06102.1| 307|Homo sapiens seven transmembrane hel... 35 0.41
BC126197-1|AAI26198.1| 592|Homo sapiens solute carrier family 6... 32 2.2
AL389979-1|CAB97535.1| 361|Homo sapiens XT3 orphan transporter ... 32 2.2
AJ289880-2|CAB96872.1| 592|Homo sapiens orphan transporter XT3 ... 32 2.2
AJ276208-1|CAB99311.1| 555|Homo sapiens orphan transporter XT3a... 32 2.2
AJ276207-1|CAB99310.1| 592|Homo sapiens orphan transporter XT3 ... 32 2.2
AF125107-1|AAL75944.1| 616|Homo sapiens neurotransmitter transp... 32 2.2
AB065890-1|BAC45262.1| 308|Homo sapiens seven transmembrane hel... 31 6.7
>U63131-1|AAB04798.1| 378|Homo sapiens CDC37 homolog protein.
Length = 378
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>U43077-1|AAB63979.1| 378|Homo sapiens CDC37 homolog protein.
Length = 378
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>BT006796-1|AAP35442.1| 378|Homo sapiens CDC37 cell division cycle
37 homolog (S. cerevisiae) protein.
Length = 378
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>BC141929-1|AAI41930.1| 110|Homo sapiens CDC37 protein protein.
Length = 110
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 35 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 82
>BC141928-1|AAI41929.1| 110|Homo sapiens CDC37 protein protein.
Length = 110
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 35 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 82
>BC127213-1|AAI27214.1| 110|Homo sapiens MBD5 protein protein.
Length = 110
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 35 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 82
>BC127212-1|AAI27213.1| 110|Homo sapiens MBD5 protein protein.
Length = 110
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 35 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 82
>BC008793-1|AAH08793.1| 378|Homo sapiens cell division cycle 37
homolog (S. cerevisiae) protein.
Length = 378
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>BC000083-1|AAH00083.1| 378|Homo sapiens cell division cycle 37
homolog (S. cerevisiae) protein.
Length = 378
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>AY864824-1|AAW34362.1| 378|Homo sapiens CDC37 cell division cycle
37 homolog (S. cerevisiae) protein.
Length = 378
Score = 60.1 bits (139), Expect = 1e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>CR542249-1|CAG47045.1| 378|Homo sapiens CDC37 protein.
Length = 378
Score = 59.3 bits (137), Expect = 2e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 124 KELKKCFDAQDVPMLQATIAKIPQEEAIYYMNRCIASGLWVPGKNDEE 267
+EL+KCFD +DV MLQ I+K+ +A Y+M RCI SGLWVP E
Sbjct: 303 EELQKCFDVKDVLMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASE 350
>AB065885-1|BAC06102.1| 307|Homo sapiens seven transmembrane helix
receptor protein.
Length = 307
Score = 34.7 bits (76), Expect = 0.41
Identities = 28/80 (35%), Positives = 36/80 (45%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGNGSLQHWNILGIKALFQFL* 121
++F F IL G FLIIF +PG ++ FFL N + I+ + L FL
Sbjct: 32 LIFYFIILPGNFLIIFTIKSDPGLTAPLY----FFLGNLAFLDASYSFIVAPRMLVDFLS 87
Query: 120 LKKNIYYVYAIQ*KLFFTFL 61
KK I Y I F FL
Sbjct: 88 AKKIISYRGCITQLFFLHFL 107
>BC126197-1|AAI26198.1| 592|Homo sapiens solute carrier family 6
(proline IMINO transporter), member 20 protein.
Length = 592
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGN--GSLQHWNILGIKALFQF 127
+ FS G+ G LI FA Y EP + H I + +F + S+ ++I G KA F +
Sbjct: 248 IFFSLGLGFGS-LIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNY 306
Query: 126 L*LKKNIYYVYAIQ*KLFFTFLYLPNLYQ 40
K + + L FL NL Q
Sbjct: 307 ENCLKKVSLLLTNTFDLEDGFLTASNLEQ 335
>AL389979-1|CAB97535.1| 361|Homo sapiens XT3 orphan transporter
protein.
Length = 361
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGN--GSLQHWNILGIKALFQF 127
+ FS G+ G LI FA Y EP + H I + +F + S+ ++I G KA F +
Sbjct: 17 IFFSLGLGFGS-LIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNY 75
Query: 126 L*LKKNIYYVYAIQ*KLFFTFLYLPNLYQ 40
K + + L FL NL Q
Sbjct: 76 ENCLKKVSLLLTNTFDLEDGFLTASNLEQ 104
>AJ289880-2|CAB96872.1| 592|Homo sapiens orphan transporter XT3
protein.
Length = 592
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGN--GSLQHWNILGIKALFQF 127
+ FS G+ G LI FA Y EP + H I + +F + S+ ++I G KA F +
Sbjct: 248 IFFSLGLGFGS-LIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNY 306
Query: 126 L*LKKNIYYVYAIQ*KLFFTFLYLPNLYQ 40
K + + L FL NL Q
Sbjct: 307 ENCLKKVSLLLTNTFDLEDGFLTASNLEQ 335
>AJ276208-1|CAB99311.1| 555|Homo sapiens orphan transporter XT3a
protein.
Length = 555
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGN--GSLQHWNILGIKALFQF 127
+ FS G+ G LI FA Y EP + H I + +F + S+ ++I G KA F +
Sbjct: 211 IFFSLGLGFGS-LIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNY 269
Query: 126 L*LKKNIYYVYAIQ*KLFFTFLYLPNLYQ 40
K + + L FL NL Q
Sbjct: 270 ENCLKKVSLLLTNTFDLEDGFLTASNLEQ 298
>AJ276207-1|CAB99310.1| 592|Homo sapiens orphan transporter XT3
protein.
Length = 592
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGN--GSLQHWNILGIKALFQF 127
+ FS G+ G LI FA Y EP + H I + +F + S+ ++I G KA F +
Sbjct: 248 IFFSLGLGFGS-LIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNY 306
Query: 126 L*LKKNIYYVYAIQ*KLFFTFLYLPNLYQ 40
K + + L FL NL Q
Sbjct: 307 ENCLKKVSLLLTNTFDLEDGFLTASNLEQ 335
>AF125107-1|AAL75944.1| 616|Homo sapiens neurotransmitter
transporter RB21A protein.
Length = 616
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGN--GSLQHWNILGIKALFQF 127
+ FS G+ G LI FA Y EP + H I + +F + S+ ++I G KA F +
Sbjct: 272 IFFSLGLGFGS-LIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNY 330
Query: 126 L*LKKNIYYVYAIQ*KLFFTFLYLPNLYQ 40
K + + L FL NL Q
Sbjct: 331 ENCLKKVSLLLTNTFDLEDGFLTASNLEQ 359
>AB065890-1|BAC45262.1| 308|Homo sapiens seven transmembrane helix
receptor protein.
Length = 308
Score = 30.7 bits (66), Expect = 6.7
Identities = 27/80 (33%), Positives = 35/80 (43%)
Frame = -1
Query: 300 MLFSFGILHGGFLIIFARYPEPGSYTSVHVINCFFLRNFGNGSLQHWNILGIKALFQFL* 121
++F IL G FLIIF +PG ++ FFL N + I+ + L FL
Sbjct: 32 LIFYLIILPGNFLIIFTIKSDPGLTAPLY----FFLGNLALLDASYSFIVVPRMLVDFLS 87
Query: 120 LKKNIYYVYAIQ*KLFFTFL 61
KK I Y I F FL
Sbjct: 88 EKKVISYRSCITQLFFLHFL 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,602,161
Number of Sequences: 237096
Number of extensions: 2199776
Number of successful extensions: 7140
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7140
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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