Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12k11
(828 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 2.0
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 23 3.4
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 4.6
DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate r... 22 6.0
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 22 6.0
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 22 6.0
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 8.0
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 8.0
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 8.0
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 8.0
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 8.0
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 8.0
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 8.0
AB006152-1|BAA24504.1| 178|Apis mellifera inositol 1,4,5-tripho... 22 8.0
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 307 PLNAFQFWNPSWWVPHHF 254
P F FWNP ++P F
Sbjct: 1157 PFTPFNFWNPPPFMPSPF 1174
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 23.0 bits (47), Expect = 3.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 624 IEIKQHSNDKYIFTECHIRHVCI 556
I+ +HS + I + H+ H CI
Sbjct: 78 IDSDRHSTTREIAEKLHVSHTCI 100
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 4.6
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 550 HQNTYVSYVTFSKNIFIITMLFYFNSNYLFETQILYP*ISVSYCYKF 690
+ N Y +Y ++ N Y+N NY+ + + P + + YC F
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVP-VPI-YCGNF 374
>DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate
receptor protein.
Length = 322
Score = 22.2 bits (45), Expect = 6.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 151 GHQSTFSIPLIKKKYILCVCNSMKII 74
G S PL+KK+Y L + +KII
Sbjct: 27 GSSSPRPKPLLKKEYPLVMDTKLKII 52
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 89 FNENYFLHFFIYQICI 42
FNE+ F+ F +Y CI
Sbjct: 702 FNESKFIGFTMYTTCI 717
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 89 FNENYFLHFFIYQICI 42
FNE+ F+ F +Y CI
Sbjct: 792 FNESKFIGFTMYTTCI 807
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 8.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 556 NTYVSYVTFSKNIFIITMLFYFNSNYLFETQILYP*ISVSYCYKF 690
N Y+S ++ N Y+N NY+ + + P + + YC F
Sbjct: 87 NNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVP-VPI-YCGNF 129
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 8.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 556 NTYVSYVTFSKNIFIITMLFYFNSNYLFETQILYP*ISVSYCYKF 690
N Y+S ++ N Y+N NY+ + + P + + YC F
Sbjct: 87 NNYISNISNYNNDNNYNKKLYYNINYIEQIPVPVP-VPI-YCGNF 129
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 8.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 562 YVSYVTFSKNIFIITMLFYFNSNYLFETQILYP*ISVSYCYKF 690
Y +Y ++ N Y+N NY+ + + P + V YC F
Sbjct: 91 YSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVP-VPV-YCGNF 131
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 476 DICYKNNTNRVFYLKLTKYIVFCIKM 399
D C NT+ + Y L+ + + CI M
Sbjct: 334 DQCLFYNTDFIIYSSLSSFYIPCIIM 359
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 485 YFSDICYKNNTNRVFYLKLTKYI-VFCIKMKNSN 387
YF +IC N RV ++ Y +F + + + N
Sbjct: 519 YFGEICLLTNARRVASVRAETYCNLFSLSVDHFN 552
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.8 bits (44), Expect = 8.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 556 NTYVSYVTFSKNIFIITMLFYFNSNYLFETQILYP*ISVSYCYKF 690
N Y+S ++ N Y+N NY+ + + P + + YC F
Sbjct: 325 NNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVP-VPI-YCGNF 367
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 485 YFSDICYKNNTNRVFYLKLTKYI-VFCIKMKNSN 387
YF +IC N RV ++ Y +F + + + N
Sbjct: 487 YFGEICLLTNARRVASVRAETYCNLFSLSVDHFN 520
>AB006152-1|BAA24504.1| 178|Apis mellifera inositol
1,4,5-triphosphate recepter protein.
Length = 178
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 127 PLIKKKYILCVCNSMKII 74
PL+KK+Y L + +KII
Sbjct: 3 PLLKKEYPLVMDTKLKII 20
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,433
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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