Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12k06
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 152 3e-38
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 140 2e-34
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 139 2e-34
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 130 2e-31
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 110 2e-25
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 101 5e-23
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 88 7e-19
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 58 9e-10
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 2e-04
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 30 0.26
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 4.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 7.4
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 25 7.4
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 152 bits (369), Expect = 3e-38
Identities = 75/121 (61%), Positives = 85/121 (70%)
Frame = -3
Query: 549 LAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDENFKLKHYGAGWL 370
LA +G GY+GS FHRVI NFMIQ G+SIYG RF DENFKL H G L
Sbjct: 62 LATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLL 121
Query: 369 SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVV 190
SMANAG D+NGSQFFITTVKTPWLDG HVVFG+VL G D+V+KI T D+P++DV
Sbjct: 122 SMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVK 181
Query: 189 I 187
I
Sbjct: 182 I 182
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 140 bits (338), Expect = 2e-34
Identities = 77/134 (57%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Frame = -3
Query: 522 YKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDENFKLKHYGAGWLSMANAGKDT 343
YKGS+FHRVIKNFM+Q G SIYGE+FEDENF+LKH LSMANAG +T
Sbjct: 51 YKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNT 110
Query: 342 NGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISD----TK 175
NGSQFFITTV TP LDG+HVVFGKV++G V+ IE T ND PV VVI + TK
Sbjct: 111 NGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLET-KNDDPVVPVVIEECGTCTK 169
Query: 174 TEVVAEPFSVTKES 133
++ A VT +S
Sbjct: 170 DQIEAPKPDVTGDS 183
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 139 bits (337), Expect = 2e-34
Identities = 69/118 (58%), Positives = 82/118 (69%)
Frame = -3
Query: 534 EGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDENFKLKHYGAGWLSMANA 355
+G GY GS FHRVI FM+Q G+SIYGE+F DENF LKH G LSMANA
Sbjct: 42 KGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANA 101
Query: 354 GKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISD 181
G +TNGSQFFITTV TPWLDG+HVVFG+V EGMDVV+K+E G+N + ++ D
Sbjct: 102 GPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVES--LGSNSGATRARIVID 157
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 130 bits (313), Expect = 2e-31
Identities = 67/120 (55%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = -3
Query: 543 QKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGER-FEDENFKLKHYGAGWLS 367
QKP G YK S FHR+I+ FMIQ +I+ R F DENF LKH G LS
Sbjct: 50 QKPIG--YKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLS 107
Query: 366 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 187
MANAGKD+NG QFFITTV +LDG+HVVFG+V+EG D+V++IE T GAN RP +V I
Sbjct: 108 MANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAI 167
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 110 bits (264), Expect = 2e-25
Identities = 54/113 (47%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Frame = -3
Query: 522 YKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDE-NFKLKHYGAGWLSMANAGKD 346
Y G FHRVI +F+IQ SIYG++F+DE + L H GAG LSMANAG +
Sbjct: 38 YDGVIFHRVIPDFVIQGGDPTGTGRGGT-SIYGDKFDDEIHSDLHHTGAGILSMANAGPN 96
Query: 345 TNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 187
TN SQFFIT TPWLDG+H +FG+V+ G+ V +++ + T ++DRP++ + I
Sbjct: 97 TNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKI 149
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 101 bits (243), Expect = 5e-23
Identities = 54/113 (47%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Frame = -3
Query: 522 YKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDE-NFKLKHYGAGWLSMANAGKD 346
Y + FHR+IKNFMIQ SI+ + FEDE + LKH +SMAN+G +
Sbjct: 491 YDNTIFHRIIKNFMIQGGDPLGDGTGG-ESIWKKDFEDEISPNLKHDRPFTVSMANSGPN 549
Query: 345 TNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 187
TNGSQFFITT TPWLDG+H +F + G+DVV +IE T DRP++ I
Sbjct: 550 TNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQGETDKYDRPLEPTKI 602
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 88.2 bits (209), Expect = 7e-19
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Frame = -3
Query: 522 YKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDENFK-LKHYGAGWLSMANAGKD 346
Y+ + FHR I FMIQ +SI+G+ F+DE LKH G +SMAN GK+
Sbjct: 312 YRNTIFHRNIARFMIQGGDPSGTGRGG-QSIWGKPFKDEFCNPLKHDDRGIISMANRGKN 370
Query: 345 TNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISDTKTEV 166
TNGSQFFI LD +H +FG+V+ G++V+ +E T +ND P + + D +
Sbjct: 371 TNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLED--III 428
Query: 165 VAEPFSVTKE 136
+PF K+
Sbjct: 429 FVDPFEEWKK 438
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 58.0 bits (134), Expect = 9e-10
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = -3
Query: 522 YKGSKFHRVIKNFMIQXXXXXXXXXXXGRSIYGERFEDENF-KLKHYGAGWLSMANAGKD 346
Y G+ HRV+ F+IQ SIYGE F E +L+ G + MA +
Sbjct: 49 YDGTIVHRVVPEFLIQGGDPTGTGMGG-ESIYGEPFAVETHPRLRFIRRGLVGMACTENE 107
Query: 345 TNGSQFFITTVKTPWLDGRHVVFGKVL-EGMDVVQKIEMTVTGANDRPVKDVVISDTKTE 169
N SQFFIT TP +G+ +FG+V+ + + V +I AN RPV I TE
Sbjct: 108 GNNSQFFITLGPTPEWNGKQTLFGRVVGDTIYNVVRISELELDANQRPVFPPKI--ISTE 165
Query: 168 VVAEPFSVTK 139
V+ F+ K
Sbjct: 166 VIDNYFTDIK 175
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.3 bits (90), Expect = 2e-04
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Frame = -3
Query: 426 GERFEDENFK--LKHYGAGWLSMANA---GKDTN----GSQFFIT-TVKTPWLDGRHVVF 277
G RF F L H G +SM+ A +D GSQF IT + LD R+ ++
Sbjct: 74 GTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEGLDERYPIY 133
Query: 276 GKVLEGMDVVQKIEMTVTGANDRPVKDVVISDTKTEVVAEPF 151
G+V EG D + KI + +P +D+ I T ++ +PF
Sbjct: 134 GQVAEGFDTLLKINDAICDEEGQPYRDIRIK--HTIILDDPF 173
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 146 TLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPKTT 286
+L TT+V+V+++ T G PVT SIF T + + T +T+
Sbjct: 460 SLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEATDTSVQTS 506
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 158 SATTSVFVSDITTSLTGRSFAPVTVISIFCT--TSIP---SKTLPKTTCLP 295
+++TS+ + +TS T + +P+ S CT TSIP + T P T +P
Sbjct: 256 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 158 SATTSVFVSDITTSLTGRSFAPVTVISIFCTTS 256
+++TS+ + +TS T + +P+ S CTTS
Sbjct: 200 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 232
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -3
Query: 300 LDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISDTKTEVVAEPFSVTKESAH*I 121
L G H + G+ L +D + I TV + ++ SDT T++ T ++ +
Sbjct: 109 LSGSHTLTGEALSILDSIPSIAYTVPDLDAVVTINIYESDTNTQLAC--VRTTVQNGRSV 166
Query: 120 YNKCL 106
Y++ +
Sbjct: 167 YHRAV 171
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 140 FVTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKT 271
+ T S+ S+F T S T +PV+ S T+ +PS T
Sbjct: 75 YATPTSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSST 118
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 294 GRHVVFGKVLE-GMDVVQKIEMTVTGANDRPVKDVV 190
GR +V V+E G+D+VQ+ + A ++ V+DV+
Sbjct: 929 GRSMVEKLVVEYGLDIVQRSMYGIQAAAEKAVRDVL 964
>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 327 FITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGA-NDRPVKDV 193
F+ K+P +GR VV+GK + + ++ M V+ A +R ++D+
Sbjct: 147 FVDDTKSP--EGRSVVYGKKVTAFNSTGELVMGVSSALRERNMQDL 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,754
Number of Sequences: 5004
Number of extensions: 43902
Number of successful extensions: 132
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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