Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k06
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 365 IDNQPAP*CFSLKFSSSK 418
           + NQ +  CFSLKF + K
Sbjct: 537 LGNQNSEMCFSLKFKNKK 554


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 382 TIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 534
           ++ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 73  SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 382 TIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 534
           ++ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 111 SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 513 SLCTPPPQVSEL 548
           S  TPPPQV E+
Sbjct: 685 SATTPPPQVDEV 696


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 134 LSFVTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPK 280
           L++V  K      V + DI  S+TG++ A       +C   IP   L K
Sbjct: 145 LAYVAAK--LALGVRLPDIHNSVTGKTTACFEPSLDYCVVKIPRWDLGK 191


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 170 SVFVSDITTSLTGRSFAPVTVI 235
           S FVSD+ T L    F P  +I
Sbjct: 462 SNFVSDVVTKLRYEVFQPGDII 483


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 170 SVFVSDITTSLTGRSFAPVTVI 235
           S FVSD+ T L    F P  +I
Sbjct: 430 SNFVSDVVTKLRYEVFQPGDII 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,636
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)