Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k05
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...   106   4e-24
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    38   0.002
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    36   0.008
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    35   0.011
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    33   0.034
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    32   0.078
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.55 
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.55 
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.97 
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.0  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    27   3.9  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   5.2  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   6.8  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    25   9.0  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   9.0  

>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score =  106 bits (254), Expect = 4e-24
 Identities = 71/209 (33%), Positives = 113/209 (54%), Gaps = 13/209 (6%)
 Frame = -3

Query: 744 KSVKEFADNVLHKYPKINLLVNNAGIMYGKYELTTDGFESQLAVNHLGHFYLTHLLLPAL 565
           +SV + A++ + K  K+++LVNNAGIM   +ELT DG+E Q+  N+L H+  T LLLP L
Sbjct: 106 ESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTELLLPTL 165

Query: 564 KKAGNLCEPS--RFINVTSCGH----YPGQIYFDDINMKEHYDET-AAYAQSKLAQLMMA 406
           ++    C P   R ++V S  +    Y G IYF D+N+      T A Y QSK AQ++ +
Sbjct: 166 RRTAEECRPGDVRIVHVASIAYLQAPYSG-IYFPDLNLPHVLLGTFARYGQSKYAQILYS 224

Query: 405 RYINKIMEENNIPVKGYSVHPGIVNTDL--FDGT-VFKRVFPWAMKLFFKTPEKGAVSIL 235
             + K +E+  I     S+HPG++ T+L  +  T   K +     +     P +GA++ L
Sbjct: 225 IALAKRLEKYGI--YSVSLHPGVIRTELTRYSPTFALKLLEKSVFQYLLLDPIRGAMTSL 282

Query: 234 FACFNEELQK---RGGLYISNCIEGISNR 157
           +A  + E+ K    G  + +    GI +R
Sbjct: 283 YAATSPEISKEHLNGAYFTAIAQRGILHR 311


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
 Frame = -3

Query: 447 AAYAQSKLAQLMMARYINKIMEENNIPVKGYSVHPGIVNTDLFDGTVFKRVFPW-----A 283
           +AY QSK A     + I+  +E++   V   S+HPG+VNTD+F   + K    +     +
Sbjct: 157 SAYGQSKAALNYTMKEISFELEKDGFVV--VSIHPGVVNTDMFVNAMQKLASKYPEMVES 214

Query: 282 MKLFFKTPEKGAVSILFACFNEELQKRGGLY 190
           +K    +PE+ A S+L    N + +  G  Y
Sbjct: 215 IKSNAISPEQSASSMLKIVDNLKTEDNGMFY 245


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
 Frame = -3

Query: 747 LKSVKEFADNVLHKYPKINLLVNNAGI-MYGKYE-LTTDGFESQLAVNHLGHFYLTHLLL 574
           +KSV+    +   ++  +++++NNAG  + G++E    +    Q+ VN  G  Y+T   L
Sbjct: 59  VKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEAL 118

Query: 573 PALKKAGNLCEPSRFINVTS-CGHYP 499
             ++++G   +  R + ++S  G+YP
Sbjct: 119 NLMRESG---KGGRILQISSVAGYYP 141


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 8/195 (4%)
 Frame = -3

Query: 750 SLKSVKEFADNVLHKYPKINLLVNNAGIM--YGKYELTTDG-FESQLAVNHLGHFYLTHL 580
           SL+S  E A  V      +++L  N+ +   +G    T D  + S    N LG  ++   
Sbjct: 65  SLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLGPIHVYQA 124

Query: 579 LLPALKKAGNLCEPSRFINVTSCGHYPGQIYFDDINMKEHYDETAAYAQSKLAQLMMARY 400
             P +KK       S+ I  TS        +F            +AY QSK A     + 
Sbjct: 125 FYPLIKKGR-----SKIIVFTSSLAGSMGAFFPS--------SQSAYGQSKAALNYTMKE 171

Query: 399 INKIMEENNIPVKGYSVHPGIVNTDLFDGTVFKRV--FPWAMKLFFK---TPEKGAVSIL 235
           I+  +++    V   S+HPG V TD     V +     P  + LF K   TPEK A  +L
Sbjct: 172 ISFELQDEGFIV--ISIHPGAVRTDSAQEIVNQHAEKKPEILDLFAKQALTPEKSASDML 229

Query: 234 FACFNEELQKRGGLY 190
               N + +  G  Y
Sbjct: 230 KVVDNLKPENNGLFY 244


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 747 LKSVKEFADNVLHKYPKINLLVNNAGIMYGK---YELTTDGFESQLAVNHLGHFYLTHLL 577
           LKS+    +++  ++  I++L+NNAG+  G     +L  D   + +  N LG   +T  +
Sbjct: 69  LKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMITTNVLGMMAMTRAV 128

Query: 576 LP 571
           LP
Sbjct: 129 LP 130


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
 Frame = -3

Query: 750 SLKSVKEFADNVLHKYPKINLLVNNAGIMYG-KYELTT--DGFESQLAVNHLGHFYLTHL 580
           SL+S  E A  V     K+++L  N+GI +     L T  D + S    N LG  ++   
Sbjct: 65  SLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLGPIHVYQA 124

Query: 579 LLPALKKAGNLCEPSRFINVTSCGHYPGQIYFDDINMKEHYDETAAYAQSKLAQLMMARY 400
             P +KK       S+ I  TS        +F        ++++  Y QSK A     + 
Sbjct: 125 FYPLVKKG-----ESKIIVFTSSLVGSMGAFFP-------FNQSG-YGQSKAALNFTMKE 171

Query: 399 INKIMEENNIPVKGYSVHPGIVNTD 325
           I+  +++    V   S+HPG+V TD
Sbjct: 172 ISFELQDEGFIV--ISIHPGMVRTD 194


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 750 SLKSVKEFADNVLHKYPKINLLVNNAGI-MYGKYELTT-DGFESQLAVNHLGHFYLTHLL 577
           +  S+K+  +  +  + +I++L+NNAG  +Y   E TT +   +    N  G   +   +
Sbjct: 25  NFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVIKAI 84

Query: 576 LPALKKAGNLCEPSRFINVTSCG 508
            P  +   N       INV+S G
Sbjct: 85  TPIFRSQHN----GMIINVSSIG 103


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 750 SLKSVKEFADNVLHKYPKINLLVNNAGI-MYGKYELTT-DGFESQLAVNHLGHFYLTHLL 577
           +  S+K+  +  +  + +I++L+NNAG  +Y   E TT +   +    N  G   +   +
Sbjct: 25  NFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVIKAI 84

Query: 576 LPALKKAGNLCEPSRFINVTSCG 508
            P  +   N       INV+S G
Sbjct: 85  TPIFRSQHN----GMIINVSSIG 103


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = -3

Query: 447 AAYAQSKLAQLMMARYINKIMEENNIPVKGYSVHPGIVNTDLFDGTV--FKRVFPWAMKL 274
           +AY QSK A     + ++  + + +      S+HPG+V TD+    +  F    P  +  
Sbjct: 156 SAYGQSKAAINFTMKELSVELADEHFTF--ISIHPGVVKTDMNADAIKKFTETSPEMLTY 213

Query: 273 FFKT---PEKGAVSILFACFNEELQKRGGLY 190
             K    PE+   S+L    N + +  G  Y
Sbjct: 214 LKKVTIIPEESVSSMLKVVDNLKPENNGSFY 244


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 252 GAVSILFACFNEELQ-KRGGLYISNCIEGISNRFSKNLEYQKILXELS 112
           G   IL +C  E+ +  R G Y++N +EG++ +   + E +K+  ++S
Sbjct: 92  GVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDIS 139


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 245  FLYSLRVSMKNCRSGEDYTLVIVLKGSVIDFQRIWNIKKYFXSYPVN 105
            F  +  ++M+  RS +D TL+ VL+  + D    WN KK    YP N
Sbjct: 2287 FRKASEITMRLLRSNQD-TLMSVLESFLHDPLVEWNRKKSSSKYPNN 2332


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 299 LLKTVPSNKSVLTIPGCTE--YPLTGILFSSIIL 394
           LL+TV S     TI G     YPL GILF+ ++L
Sbjct: 249 LLETVQSTIIQPTIDGMRHEGYPLVGILFTGLML 282


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 629 SKPSVVNSYFPYIIPALLTSKFIFGYLCXTLSANSLT---DFNDF 754
           SK + +N Y P  +   L+++++  + C  ++  SLT   + NDF
Sbjct: 98  SKLAELNQYVPVSVVDELSTEYLKNFKCVVVTETSLTKQLEINDF 142


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 166 DPFNTITNV*SSPLLQFFIETRKEYRNGSLFWS 264
           D F++I    +S LL F+I T +EY  G+L+ S
Sbjct: 139 DMFSSILTQFAS-LLYFYISTWEEYHTGTLYLS 170


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 642 TDGFES-QLAVNHLGHFYLTHLLLPALKKAG 553
           TD  E+  +AVN  G FYL  +     KK+G
Sbjct: 418 TDNLETGMVAVNDFGAFYLLQMPFGGCKKSG 448


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 609 HLGHFYLTHLLLPALKKAGNLCEPSRFINVTS 514
           H+G F LTH  + + +K  N   P     VTS
Sbjct: 274 HVGSFLLTHPSMESYRKDDNFLWPEDLDTVTS 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,283
Number of Sequences: 5004
Number of extensions: 67996
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)