Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k05
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.4  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   2.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 340 DCQH*FIRWYSLQKSFSMGYEIILQD 263
           D QH  +RW + Q S +  +E +  D
Sbjct: 3   DTQHFCLRWNNYQSSITSAFENLRDD 28


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 340 DCQH*FIRWYSLQKSFSMGYEIILQD 263
           D QH  +RW + Q S +  +E +  D
Sbjct: 3   DTQHFCLRWNNYQSSITSAFENLRDD 28


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 420 ELIWIVHKLQFHHNALSC*YHQNIFVPDSG 509
           +LI  + K +F H       HQN+FV +SG
Sbjct: 268 DLILTLGKKEFSHYE-----HQNVFVKNSG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,003
Number of Sequences: 438
Number of extensions: 4449
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)