Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k03
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   109   5e-25
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   107   3e-24
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    53   6e-08
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    29   0.82 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    28   1.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.3  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  109 bits (262), Expect = 5e-25
 Identities = 49/63 (77%), Positives = 54/63 (85%)
 Frame = -1

Query: 836 AWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGA 657
           AW +LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ D +   
Sbjct: 391 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYE 450

Query: 656 DDE 648
            DE
Sbjct: 451 ADE 453


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  107 bits (256), Expect = 3e-24
 Identities = 46/56 (82%), Positives = 52/56 (92%)
 Frame = -1

Query: 836 AWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDM 669
           AW +LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ ++
Sbjct: 387 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEV 442


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
 Frame = -1

Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGA 657
           +L  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +  + Y E  I+  D     
Sbjct: 380 RLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEI 439

Query: 656 DDE 648
           ++E
Sbjct: 440 EEE 442


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 123 NVGDNIIRACSAKRVYVKVMS 61
           N+GD+I+ AC  K +Y K++S
Sbjct: 131 NIGDDILSACIPKEIYEKMLS 151


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 707 VPELPNLLSLQRIRLPPSLRLHTNAQKLAWNT 802
           +PELPNL +L+ +  PPSL   +   +  W T
Sbjct: 15  IPELPNLEALRSLWPPPSLN-ESGDTRSVWTT 45


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 76  INSLCTTCSYNIVTDINAHFSV 141
           I++LCTTC+ +++T+I+   +V
Sbjct: 575 IHTLCTTCASHLLTEIDGFMAV 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,738
Number of Sequences: 5004
Number of extensions: 67157
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)