Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12k03
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 105 4e-23
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 101 7e-22
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 98 7e-21
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 98 7e-21
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 56 5e-08
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 55 6e-08
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 55 8e-08
03_01_0034 + 318432-318825,318902-319851 55 8e-08
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 53 2e-07
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 53 3e-07
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 52 4e-07
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 51 1e-06
01_06_1014 - 33810112-33811995 33 0.37
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591... 28 8.0
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 28 8.0
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 105 bits (252), Expect = 4e-23
Identities = 45/62 (72%), Positives = 54/62 (87%)
Frame = -1
Query: 833 WGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGAD 654
+ ++DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E+ + + G D
Sbjct: 388 FSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESDENEDGDD 447
Query: 653 DE 648
+
Sbjct: 448 GD 449
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 101 bits (242), Expect = 7e-22
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = -1
Query: 833 WGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGAD 654
+ ++DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E GAD
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE------GAD 441
Query: 653 DE 648
DE
Sbjct: 442 DE 443
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 98.3 bits (234), Expect = 7e-21
Identities = 44/62 (70%), Positives = 51/62 (82%)
Frame = -1
Query: 833 WGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGAD 654
+ ++D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E D G +
Sbjct: 388 FSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSEFDDGDEGDE 447
Query: 653 DE 648
+
Sbjct: 448 GD 449
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 98.3 bits (234), Expect = 7e-21
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = -1
Query: 833 WGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 672
+ ++D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E D
Sbjct: 469 FSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEVED 522
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 55.6 bits (128), Expect = 5e-08
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 648
++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + T+D + +DE
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDE 439
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 55.2 bits (127), Expect = 6e-08
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 648
++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + T+D + +DE
Sbjct: 401 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDE 460
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGA 657
++ +F M+ ++AF+HWY GEGM+E EF+EA DL A + Y + E D +
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEEDYEEEE 439
Query: 656 DDE 648
+DE
Sbjct: 440 EDE 442
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 54.8 bits (126), Expect = 8e-08
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 648
++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + T+D + +DE
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEDE 439
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 648
++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + T+D + ++E
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEYEDEEE 439
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 648
++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + T+D ++E
Sbjct: 560 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEAEYEEEE 619
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 672
++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + T+D
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 431
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = -1
Query: 827 KLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 648
++ +F M+ ++AF+HWY EGM+E EF+EA ++ L +Y + T++ DD+
Sbjct: 396 RVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEDDYDEDDD 455
>01_06_1014 - 33810112-33811995
Length = 627
Score = 32.7 bits (71), Expect = 0.37
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 797 SKRAFVHWYVGEGMEEGEFSEAREDL 720
SKRA +HW++GEG+ ++ ED+
Sbjct: 187 SKRAMIHWWIGEGLVAATRNQTAEDV 212
>03_05_0696 -
26856413-26856416,26857917-26858524,26859041-26859101,
26859181-26859557,26860314-26861156
Length = 630
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 559 AHSSSSDFVTRDKYTIAKVQIELSYKNDHNSSS---APG 666
AH++ +D + D ++ A QIE N+HNS S APG
Sbjct: 109 AHNAGADLIHNDTHSSA--QIEFGLLNNHNSMSVAPAPG 145
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 47 TKHILDITF-T*TLFALHALIILSPTLTHTSPSNICFSI*NWAKTEKYIARLRDEEVKNA 223
TKH LD+ F T T F + SP + H ++ S+ +W+K +A+ + +NA
Sbjct: 93 TKHCLDLPFLTATGFGI------SP-MFHKD-IDLAGSVGSWSKIHYEVAKCKSARTQNA 144
Query: 224 CEGGI 238
C GI
Sbjct: 145 CTAGI 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,850,178
Number of Sequences: 37544
Number of extensions: 406927
Number of successful extensions: 985
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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