Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12k01
         (837 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87685-1|BAA13438.2| 2044|Homo sapiens KIAA0244 protein.               33   1.7  
BC113652-1|AAI13653.1| 2039|Homo sapiens PHD finger protein 3 pr...    33   1.7  
BC113650-1|AAI13651.1| 2039|Homo sapiens PHD finger protein 3 pr...    33   1.7  
AL445676-1|CAI16104.1| 2039|Homo sapiens PHD finger protein 3 pr...    33   1.7  
AL050329-1|CAM45842.1| 2039|Homo sapiens PHD finger protein 3 pr...    33   1.7  
AF091622-1|AAF21292.1| 2039|Homo sapiens PHD finger protein 3 pr...    33   1.7  

>D87685-1|BAA13438.2| 2044|Homo sapiens KIAA0244 protein.
          Length = 2044

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 616 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQRD*RKQYN 789
           RSP    +L+A  +  SLRQ ++ KR  A P   +  A    ++T +A  KQ + R Q  
Sbjct: 129 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPE-RSQVK 187

Query: 790 VQAVSELGP 816
            +    L P
Sbjct: 188 EEVCMSLKP 196


>BC113652-1|AAI13653.1| 2039|Homo sapiens PHD finger protein 3
           protein.
          Length = 2039

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 616 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQRD*RKQYN 789
           RSP    +L+A  +  SLRQ ++ KR  A P   +  A    ++T +A  KQ + R Q  
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPE-RSQVK 182

Query: 790 VQAVSELGP 816
            +    L P
Sbjct: 183 EEVCMSLKP 191


>BC113650-1|AAI13651.1| 2039|Homo sapiens PHD finger protein 3
           protein.
          Length = 2039

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 616 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQRD*RKQYN 789
           RSP    +L+A  +  SLRQ ++ KR  A P   +  A    ++T +A  KQ + R Q  
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPE-RSQVK 182

Query: 790 VQAVSELGP 816
            +    L P
Sbjct: 183 EEVCMSLKP 191


>AL445676-1|CAI16104.1| 2039|Homo sapiens PHD finger protein 3
           protein.
          Length = 2039

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 616 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQRD*RKQYN 789
           RSP    +L+A  +  SLRQ ++ KR  A P   +  A    ++T +A  KQ + R Q  
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPE-RSQVK 182

Query: 790 VQAVSELGP 816
            +    L P
Sbjct: 183 EEVCMSLKP 191


>AL050329-1|CAM45842.1| 2039|Homo sapiens PHD finger protein 3
           protein.
          Length = 2039

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 616 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQRD*RKQYN 789
           RSP    +L+A  +  SLRQ ++ KR  A P   +  A    ++T +A  KQ + R Q  
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPE-RSQVK 182

Query: 790 VQAVSELGP 816
            +    L P
Sbjct: 183 EEVCMSLKP 191


>AF091622-1|AAF21292.1| 2039|Homo sapiens PHD finger protein 3
           protein.
          Length = 2039

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 616 RSPINKKQLLAASKRSSLRQFSVPKR--ATPAGRSSSARNTLLATRRAEYKQRD*RKQYN 789
           RSP    +L+A  +  SLRQ ++ KR  A P   +  A    ++T +A  KQ + R Q  
Sbjct: 124 RSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPE-RSQVK 182

Query: 790 VQAVSELGP 816
            +    L P
Sbjct: 183 EEVCMSLKP 191


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,774,740
Number of Sequences: 237096
Number of extensions: 2413546
Number of successful extensions: 12772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12772
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)