Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j23
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    28   0.097
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.69 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.69 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 309 RPTVIGCSLQTLEFSSGSCFAVIY 380
           RPT I C +Q   F++G CF V+Y
Sbjct: 715 RPTDIVCGIQ--RFAAGFCFTVVY 736


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 183 SPRIATSPSAALLGHGPRSGHARLGSDAAR 272
           +PRIA++PS++     P  G A  G  + R
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSKR 543


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 620 PGKEGGWSRNEIMGPLLDPKLYPVRVAASPE 528
           P KE   + N++M PL +P ++  +   SPE
Sbjct: 641 PDKEHVLAHNDLMSPLDEPAVHIKQEGQSPE 671


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +1

Query: 613 FPGGSCGISPPEYCGHRQ-SGGL 678
           FPG   G+ PP+  G  Q S GL
Sbjct: 326 FPGMGHGLQPPDLAGTSQGSAGL 348


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 55  LGPEVRHYLLCSLSRIMIAPSLETPSWYSDF 147
           + P VR   +  L R+++     TPS  SD+
Sbjct: 337 MAPWVRRVFIHVLPRLLVMRRYNTPSKRSDY 367


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 212 SAGAGSDPRAKCETTSAVPP 153
           SA  G +   KC+ T   PP
Sbjct: 321 SARVGDNVEIKCDVTGTPPP 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,387
Number of Sequences: 438
Number of extensions: 5452
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)