Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12j21
(178 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 0.19
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 0.26
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 0.26
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 0.59
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 20 2.4
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 19 4.2
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 19 4.2
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 19 4.2
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 19 4.2
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 19 4.2
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 19 4.2
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 19 4.2
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 19 4.2
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 19 4.2
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 19 5.5
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 19 7.3
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 19 7.3
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 18 9.6
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 18 9.6
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 18 9.6
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 18 9.6
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 18 9.6
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 0.19
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 165 IEFEGRVYAQTTRLTIRYKICCMKKRFTTVLFMYVPT 55
I F + +T T+ I CM F TVL Y+P+
Sbjct: 230 ITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFYLPS 266
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 0.26
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 165 IEFEGRVYAQTTRLTIRYKICCMKKRFTTVLFMYVPT 55
I F + +T T+ I CM F TVL Y+P+
Sbjct: 234 ITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPS 270
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 0.26
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 165 IEFEGRVYAQTTRLTIRYKICCMKKRFTTVLFMYVPT 55
I F + +T T+ I CM F TVL Y+P+
Sbjct: 234 ITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPS 270
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 0.59
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 165 IEFEGRVYAQTTRLTIRYKICCMKKRFTTVLFMYVPT 55
I F + +T T+ I C+ F TVL Y+P+
Sbjct: 239 ITFNITMRRKTLFYTVNLIIPCVGITFLTVLVFYLPS 275
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 79 SSKPFFHAAYFITYSKPS 132
S+ P FH + Y KPS
Sbjct: 397 SATPVFHQEMALYYLKPS 414
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 19.4 bits (38), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N + K +YY Y+
Sbjct: 92 SNYNNYNNNNNYNNYKKLYYNINYI 116
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 19.4 bits (38), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 82 SKPFFHAAYFITYSKPSSLSINATF 156
SKPF + I KPS S +F
Sbjct: 536 SKPFKYQGITILEKKPSRSSTLVSF 560
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 19.0 bits (37), Expect = 5.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 74 CLCTYLHANL 45
CLC YL+ L
Sbjct: 326 CLCEYLYKQL 335
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 139 SNYSAYYTL*NMLHEKTVYYCFVYV 65
SNY+ Y N ++K YY + +
Sbjct: 92 SNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 18.6 bits (36), Expect = 7.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -1
Query: 109 NMLHEKTVYYCFVYVRTYMQTLFKVNYI 26
N+L +T Y F Y+ Q + + +I
Sbjct: 37 NLLKNRTGRYMFTYLHLLYQDVHVMIWI 64
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 18.2 bits (35), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 176 NECLLNSKVAFMLKLLGL 123
NECLLN + + LG+
Sbjct: 485 NECLLNIQKSPRTLTLGI 502
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -1
Query: 103 LHEKTVYYCFVYVRTYMQTLFKVNYIVLFYKIN 5
L KT++ Y Y + N L+Y IN
Sbjct: 85 LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -1
Query: 103 LHEKTVYYCFVYVRTYMQTLFKVNYIVLFYKIN 5
L KT++ Y Y + N L+Y IN
Sbjct: 85 LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -1
Query: 103 LHEKTVYYCFVYVRTYMQTLFKVNYIVLFYKIN 5
L KT++ Y Y + N L+Y IN
Sbjct: 85 LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 18.2 bits (35), Expect = 9.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 170 CLLNSKVAFMLKLLGLLYVIKY 105
CL N+ AF+ L G+ V+++
Sbjct: 162 CLGNNLTAFLTTLDGVNDVVQH 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,888
Number of Sequences: 438
Number of extensions: 765
Number of successful extensions: 28
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used: 2593980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
- SilkBase 1999-2023 -