Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j18
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    29   0.052
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    26   0.28 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   6.0  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 623 TGQALRGLKMEFDHDGKITCLTHRRRRHEVDVITGTSDGELFIWSLNNKGLIAKFSAHPS 444
           +G+ L  LK EF  +  +T     RRR ++    G ++ ++ IW  N +  I K S   +
Sbjct: 28  SGEQLARLKREFAENRYLT----ERRRQQLSRDLGLNEAQIKIWFQNKRAKIKKASGQKN 83

Query: 443 EI 438
            +
Sbjct: 84  PL 85


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 623 TGQALRGLKMEFDHDGKITCLTHRRRRHEVDVITGTSDGELFIWSLNNKGLIAKFSAHPS 444
           + + L  LK EF  +  +T     RRR ++    G ++ ++ IW  N +  I K S   +
Sbjct: 28  SAEQLARLKREFAENRYLT----ERRRQQLSRDLGLTEAQIKIWFQNKRAKIKKASGQKN 83

Query: 443 EI 438
            +
Sbjct: 84  PL 85


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 567 GYLSVVIEFHFETPECLSSLS 629
           G+LS ++EF  E  + LSS++
Sbjct: 865 GHLSTLVEFALELKKALSSIN 885


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 561 QTGYLSVVIEFHFETPECLSSLSNV 635
           +T Y  VV+    ++ EC  +L N+
Sbjct: 184 ETSYFKVVVVEDVDSVECCGALKNI 208


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 450 VSRELGNQTFIIQTPYEK 503
           V RELGN T I+   + K
Sbjct: 498 VKRELGNDTVIVMMNFSK 515


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 644 VXGNIGKTGQALRGLKMEFDHDGKITC 564
           V G+I   GQA+    + FD    I+C
Sbjct: 134 VFGSISGMGQAMTNAAIAFDRYRTISC 160


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 644 VXGNIGKTGQALRGLKMEFDHDGKITC 564
           V G+I   GQA+    + FD    I+C
Sbjct: 134 VFGSISGMGQAMTNAAIAFDRYRTISC 160


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 633 HWKDWTSTPGSQNGIRSRRKDNL 565
           HW    +T G +  IR +RK  L
Sbjct: 7   HWHKRRATGGKRKPIRKKRKFEL 29



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 322 SGNFFW*TECRTLRS 366
           +GNF W +EC T ++
Sbjct: 62  TGNFSWGSECTTRKT 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,354
Number of Sequences: 438
Number of extensions: 4129
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)