Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j16
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    69   4e-13
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   0.85 
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   2.0  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   2.6  
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp...    25   3.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   3.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   3.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   3.4  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   4.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.0  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   6.0  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 68.5 bits (160), Expect = 4e-13
 Identities = 34/78 (43%), Positives = 46/78 (58%)
 Frame = -1

Query: 344 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 165
           S L   +  +   Y   T   LK IDA+L ++ +   +QFGY  LVGT+PFNSFLSGFIS
Sbjct: 5   SGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFIS 64

Query: 164 TVSCFVLGVCXRLQVNPE 111
            V  FV+ V  R+ +  +
Sbjct: 65  CVGQFVITVGFRMALTQQ 82


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 374 YYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVG 204
           Y C+ + I  + L    PK+       T   L  +D YL+YI ++ +    Y   +G
Sbjct: 541 YDCR-DYILGAGLCKAQPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
 Frame = +1

Query: 109 FSGLTCSRXHTPRTKQLTVDIKP-------LKKELNGKVPTRQ---Q*PNCMTAVRKI*K 258
           F G+T  R H    K    DI P       L KE+N      Q   + P+   ++R   +
Sbjct: 36  FEGVTLQRRHVKGMKSYGSDITPRRPKQLGLPKEVNTSECIDQGSWRKPSAFESLRSYSR 95

Query: 259 RYASIILSFLGV 294
           +++  I SF+GV
Sbjct: 96  KFSKRIFSFIGV 107


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 341 SLTAVIPK--LYQEYTTKTPKKLKIID 267
           +LT   PK  LY  Y++++PK  KI+D
Sbjct: 145 NLTVASPKSNLYYRYSSESPKYAKILD 171


>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
           Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 88

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 352 SQCLHLLL*FQNCIKNTQRK 293
           +QC +L+   +NC+K T RK
Sbjct: 51  AQCANLVAALENCMKTTHRK 70


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 201 FPI*FFLKWFYIYSKLL 151
           FP  FFL WFY++  +L
Sbjct: 293 FPFLFFLFWFYMHFNIL 309


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 46  ECANMKSAKPRSALSPWNSFLFSGLTCSRXHTPRTKQLTVDIKPLKKELNG 198
           +C   +S  P+  LSPWN  L      S   + + K+    +K  K+E++G
Sbjct: 633 QCEQCESPLPK--LSPWNMLLLLHGLLSVDISLKQKKFVPGMKLSKREIDG 681


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 362 INKITMSSLTAVIPKLYQE 306
           INK+  S++  +IP+L+QE
Sbjct: 131 INKVNKSNIRDIIPELFQE 149


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 326 IPKLYQEYTTKT-PKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVS 156
           IP   + +   T P+KLK+  + LF++    V+  G   ++ T   +  + G +  ++
Sbjct: 80  IPTFKETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGVLIIIN 137


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 344 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGT 201
           +SL +  PK        T   L  +D YL+Y+ ++ +    Y   +G+
Sbjct: 641 ASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGS 688


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 260 LFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSC----FVLGVC 135
           L  +F+  ++ +G C +  T PF      F  T S     F+LG C
Sbjct: 448 LLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTC 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,910
Number of Sequences: 5004
Number of extensions: 31326
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)