Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12j15
(647 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens ... 68 3e-11
BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open read... 67 6e-11
BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein. 67 6e-11
BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sp... 55 3e-07
BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sp... 55 3e-07
AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein. 55 3e-07
AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein. 55 3e-07
BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein. 51 3e-06
BC039862-1|AAH39862.1| 274|Homo sapiens outer dense fiber of sp... 40 0.006
BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein. 38 0.031
U38292-1|AAB41133.1| 2805|Homo sapiens microtubule-associated pr... 31 3.5
U38291-1|AAB41132.1| 2805|Homo sapiens microtubule-associated pr... 31 3.5
AB040964-1|BAA96055.2| 1206|Homo sapiens KIAA1531 protein protein. 31 3.5
U25816-1|AAB61242.1| 218|Homo sapiens TATA-binding protein asso... 31 4.7
U13991-1|AAA62230.1| 218|Homo sapiens TATA-binding protein asso... 31 4.7
CR541943-1|CAG46741.1| 218|Homo sapiens TAF10 protein. 31 4.7
BC012088-1|AAH12088.1| 218|Homo sapiens TAF10 RNA polymerase II... 31 4.7
AF498312-1|AAM14627.1| 218|Homo sapiens TAF10 RNA polymerase II... 31 4.7
AF193039-1|AAG22467.1| 172|Homo sapiens unknown protein. 30 8.2
>AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ40059 fis, clone TCOLN2000139. ).
Length = 289
Score = 67.7 bits (158), Expect = 3e-11
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAP-RRAGPAPNAYALK--XGS------GSP 488
PGPG+++PE+ PP++ PA+++G RL P + PAPNAY + GS SP
Sbjct: 122 PGPGAYSPEKVPPVRHRTPPAFTLGCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSP 181
Query: 487 AYTMGARV----GFQAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXX 320
+YT+ R Q A+ PGP Y DAN YR + P ++
Sbjct: 182 SYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPG 241
Query: 319 AY-PPNLYNTKKNPYAYSFGTKHADWAPPM 233
A+ P + K A+S G +H+ A M
Sbjct: 242 AHCPEQVTVNKARAPAFSMGIRHSKRASTM 271
>BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open reading
frame 19 protein.
Length = 289
Score = 66.9 bits (156), Expect = 6e-11
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAP-RRAGPAPNAYALK--XGS------GSP 488
PGPG+++PE+ PP + PA+++G RL P + PAPNAY + GS SP
Sbjct: 122 PGPGAYSPEKVPPARHRTPPAFTLGCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSP 181
Query: 487 AYTMGARV----GFQAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXX 320
+YT+ R Q A+ PGP Y DAN YR + P ++
Sbjct: 182 SYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPG 241
Query: 319 AY-PPNLYNTKKNPYAYSFGTKHADWAPPM 233
A+ P + K A+S G +H+ A M
Sbjct: 242 AHCPEQVTVNKARAPAFSMGIRHSKRASTM 271
>BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein.
Length = 253
Score = 66.9 bits (156), Expect = 6e-11
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAP-RRAGPAPNAYALK--XGS------GSP 488
PGPG+++PE+ PP + PA+++G RL P + PAPNAY + GS SP
Sbjct: 86 PGPGAYSPEKVPPARHRTPPAFTLGCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSP 145
Query: 487 AYTMGARV----GFQAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXX 320
+YT+ R Q A+ PGP Y DAN YR + P ++
Sbjct: 146 SYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPG 205
Query: 319 AY-PPNLYNTKKNPYAYSFGTKHADWAPPM 233
A+ P + K A+S G +H+ A M
Sbjct: 206 AHCPEQVTVNKARAPAFSMGIRHSKRASTM 235
>BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 54.8 bits (126), Expect = 3e-07
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSG--------SPA 485
PGPG + PE+ AP++S+ AR + P P AY L G P+
Sbjct: 101 PGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPS 160
Query: 484 YTMGARV---GFQAKA-KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXA 317
+++ R GF K+PGPA Y Q D V + K P Y+ A
Sbjct: 161 FSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGA 220
Query: 316 YPPNLYN-TKKNPYAYSFGTKHADWAPPMII 227
+ P TK +FG KH+D+ P+++
Sbjct: 221 HSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 54.8 bits (126), Expect = 3e-07
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSG--------SPA 485
PGPG + PE+ AP++S+ AR + P P AY L G P+
Sbjct: 101 PGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPS 160
Query: 484 YTMGARV---GFQAKA-KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXA 317
+++ R GF K+PGPA Y Q D V + K P Y+ A
Sbjct: 161 FSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGA 220
Query: 316 YPPNLYN-TKKNPYAYSFGTKHADWAPPMII 227
+ P TK +FG KH+D+ P+++
Sbjct: 221 HSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein.
Length = 254
Score = 54.8 bits (126), Expect = 3e-07
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSG--------SPA 485
PGPG + PE+ AP++S+ AR + P P AY L G P+
Sbjct: 101 PGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPS 160
Query: 484 YTMGARV---GFQAKA-KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXA 317
+++ R GF K+PGPA Y Q D V + K P Y+ A
Sbjct: 161 FSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGA 220
Query: 316 YPPNLYN-TKKNPYAYSFGTKHADWAPPMII 227
+ P TK +FG KH+D+ P+++
Sbjct: 221 HSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein.
Length = 254
Score = 54.8 bits (126), Expect = 3e-07
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSG--------SPA 485
PGPG + PE+ AP++S+ AR + P P AY L G P+
Sbjct: 101 PGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPS 160
Query: 484 YTMGARV---GFQAKA-KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXA 317
+++ R GF K+PGPA Y Q D V + K P Y+ A
Sbjct: 161 FSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGA 220
Query: 316 YPPNLYN-TKKNPYAYSFGTKHADWAPPMII 227
+ P TK +FG KH+D+ P+++
Sbjct: 221 HSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein.
Length = 241
Score = 51.2 bits (117), Expect = 3e-06
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGAR-LGFAPRRAGPAPNAYALKXGSG--------SP 488
PGPG + PER P AP +++ R G + P P AY + G +P
Sbjct: 90 PGPGRYFPERAGNATYPSAPRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAP 149
Query: 487 AYTM-GARVG---FQAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXX 320
++ G R F+ +K+PGP Y VY+++ P ++
Sbjct: 150 TCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPA 209
Query: 319 AYPPNLYNTKKNPYAYSFGTKHADWAPPMIIRED 218
AY N+ +K P +SFG +H+D+ P++ D
Sbjct: 210 AY--NVDQHRK-PRGWSFGIRHSDYLAPLVTDAD 240
Score = 29.9 bits (64), Expect = 8.2
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Frame = -2
Query: 646 RAPGP--GSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPN-----AYALKXGSGSP 488
R PG G H P + AP + R GP P ++ G+P
Sbjct: 15 RTPGWAFGGHTGPAAPSRRTTEAPGPNTSCR-PTPQTTCGPGPGHLVPARMTVRGTDGAP 73
Query: 487 AYTMGARVGFQAKAKSPGPAVYF-QRDANVYRTKPPMYS 374
AY++ R A +PGP YF +R N P ++
Sbjct: 74 AYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHT 112
>BC039862-1|AAH39862.1| 274|Homo sapiens outer dense fiber of sperm
tails 3-like 1 protein.
Length = 274
Score = 40.3 bits (90), Expect = 0.006
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Frame = -2
Query: 616 ERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSG--------SPAYTMGAR-- 467
E+ P + RAP Y+ G R + PAPN Y + G +P Y++ +R
Sbjct: 128 EKIHPPGERRAPQYTFGYRRPYRVMDLNPAPNQYQMPLLLGPNTPVSRAAPCYSLASRDK 187
Query: 466 --VGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 374
+ A PGP Y + + ++Y+ + P YS
Sbjct: 188 NWFYKEDVAGGPGPTTYARPEPSIYQNRSPTYS 220
>BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein.
Length = 109
Score = 37.9 bits (84), Expect = 0.031
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPN-----AYALKXGSGSPAYTM 476
PG H P R PRAPA++ GAR GP P ++ G+PAY++
Sbjct: 16 PGYALHDPSR------PRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSI 69
Query: 475 GARVGFQAKAKSPGP 431
R A +PGP
Sbjct: 70 YGRPRRSAPFLTPGP 84
>U38292-1|AAB41133.1| 2805|Homo sapiens microtubule-associated protein
1a protein.
Length = 2805
Score = 31.1 bits (67), Expect = 3.5
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGAR-------LGFAPRRAGPAPNAYALKXGSGSPA- 485
PGP S P PP PRAP S G L +P R P+P S +
Sbjct: 2049 PGP-SMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRRSPSPKESGRSHWDDSTSD 2107
Query: 484 --YTMGARVGFQAKAKSPGP 431
GAR + +A+SP P
Sbjct: 2108 SELEKGAREQAEKEAQSPSP 2127
>U38291-1|AAB41132.1| 2805|Homo sapiens microtubule-associated protein
1a protein.
Length = 2805
Score = 31.1 bits (67), Expect = 3.5
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Frame = -2
Query: 640 PGPGSHAPERCPPMKDPRAPAYSMGAR-------LGFAPRRAGPAPNAYALKXGSGSPA- 485
PGP S P PP PRAP S G L +P R P+P S +
Sbjct: 2049 PGP-SMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRRSPSPKESGRSHWDDSTSD 2107
Query: 484 --YTMGARVGFQAKAKSPGP 431
GAR + +A+SP P
Sbjct: 2108 SELEKGAREQAEKEAQSPSP 2127
>AB040964-1|BAA96055.2| 1206|Homo sapiens KIAA1531 protein protein.
Length = 1206
Score = 31.1 bits (67), Expect = 3.5
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -2
Query: 643 APGPGSHAPERCPPMKDPRAPAYSMGAR---LGFAPRRAGPAPNAYALKXGSGSP 488
APG P PP PRAP +++G+ L P R GP+ A GSP
Sbjct: 29 APGARRRGPRGSPP---PRAPLHALGSPGPPLSTPPARLGPSGRRAARPQRCGSP 80
>U25816-1|AAB61242.1| 218|Homo sapiens TATA-binding protein
associated factor 30 kDa subunit protein.
Length = 218
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 643 APGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 464
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 463 GFQAKAKSPGP 431
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>U13991-1|AAA62230.1| 218|Homo sapiens TATA-binding protein
associated factor 30 kDa subunit protein.
Length = 218
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 643 APGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 464
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 463 GFQAKAKSPGP 431
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>CR541943-1|CAG46741.1| 218|Homo sapiens TAF10 protein.
Length = 218
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 643 APGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 464
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 463 GFQAKAKSPGP 431
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>BC012088-1|AAH12088.1| 218|Homo sapiens TAF10 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 30kD
protein.
Length = 218
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 643 APGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 464
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 463 GFQAKAKSPGP 431
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>AF498312-1|AAM14627.1| 218|Homo sapiens TAF10 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 30 k
protein.
Length = 218
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 643 APGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKXGSGSPAYTMGARV 464
AP + AP PP+ P A S A +P P A A G+G + AR
Sbjct: 13 APASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTG----PLAARA 68
Query: 463 GFQAKAKSPGP 431
G A+ + P
Sbjct: 69 GEPAERRGAAP 79
>AF193039-1|AAG22467.1| 172|Homo sapiens unknown protein.
Length = 172
Score = 29.9 bits (64), Expect = 8.2
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Frame = -2
Query: 646 RAPGPGSHAPERCPPMKDPRAPAYS----MGARLGFA------PRRAGPAPNAYALKXGS 497
RAPG + P R P ++ P P + A G A P RAG P A GS
Sbjct: 25 RAPGHEAQHPGRAPALRPPPQPVGQRRPLVAAHPGDAAGRDQGPPRAGAGPG--AAHHGS 82
Query: 496 GSPAYTMGARVGFQAKAK 443
G A G R G +A+
Sbjct: 83 GEHAVRAGGRHGLAPRAR 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,884,120
Number of Sequences: 237096
Number of extensions: 2192220
Number of successful extensions: 7892
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7840
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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