Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12j09
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 173 2e-44
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 34 0.020
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 31 0.25
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 29 1.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.3
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 28 1.8
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 2.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.3
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz... 27 3.1
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni... 26 7.1
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.4
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 9.4
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 25 9.4
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 173 bits (421), Expect = 2e-44
Identities = 75/145 (51%), Positives = 106/145 (73%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
YN+TGLC+R SCPLANS+YA +RE+NG +YLYMKT ER FP+K W+++KLS+N+ KA+
Sbjct: 32 YNVTGLCNRQSCPLANSRYATVREDNGKLYLYMKTIERAHFPSKLWQRIKLSKNYAKALE 91
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
QI++ LLYWP +CKQR ++TQYL++ R+L L+ L+PI+ K KA
Sbjct: 92 QIDQQLLYWPGRQIHRCKQRLTRLTQYLLKARRLALKHQPALIPIKPKQAHREASRERKA 151
Query: 432 LVAARIDNAIEKQLLERLKKGTYND 358
L+AA+++ IEK+L++RLK G Y D
Sbjct: 152 LIAAKLEKNIEKELVKRLKSGVYGD 176
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 639 SRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQ 535
+RN EKAI QI+E LL W + + +Q F+ +T+
Sbjct: 398 ARNREKAIWQIHEKLLCWERALPIELRQYFIALTE 432
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 96 YQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQLPSPVPFPTLVQFLSPLHLH 275
Y +F N C ++ +++ N QH Y + F Q+P P T + +++ L+ +
Sbjct: 133 YGRFMDLNEC-YEEYINLSN--VQHISYLEYLKNLEDFDQIPKPEKNQTYINYITHLYEY 189
Query: 276 L-PFQIRFHQISLL 314
L F R H +S L
Sbjct: 190 LVSFYRRTHPLSNL 203
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 4 SFRNASDGLRFIFNFNARLFLSQYRVRHVLNIR 102
SF + + L++IFN A++FLS +R+ L R
Sbjct: 493 SFPHLVNALKYIFNILAQMFLSLWRIHPGLKYR 525
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 729 IREENGIIYLYMKTAERIMFP 667
IR+E+GII+L K A+ ++FP
Sbjct: 776 IRDEDGIIHLICKGADTVIFP 796
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 628 KVSGQFHFLPLFCWEHYSLSCLHIQINNAIFFSYWGIFAVGKWT*RST 771
K GQF L HY++S +Q N+ FFS + I + R T
Sbjct: 262 KYQGQFVALKQTKLTHYAVSIYSVQFLNSTFFSNYSIITDAYFQTRET 309
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -1
Query: 320 SKQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRLTVISTVLRRVILEGK 141
++ KRYL + L R + + ++ Q+W R+L K + + R++LE +
Sbjct: 429 NEAKRYLQETIL-RLQAIPYHLQVGQAWTSESERELEKKKEQVEKKQEELMQTRIVLEEQ 487
Query: 140 KMLMSTVILSLK 105
L+ +I K
Sbjct: 488 VFLVENMIEDAK 499
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 132 DVNS--DFESETSDIEDVADSVLR-KKKPRVEIEY 37
DVN DFE+E DI+D+ D V+ ++ E +Y
Sbjct: 444 DVNDLLDFETEREDIDDLTDEVMETEENEAAEADY 478
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 663 KQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKE 490
KQW K +E +H++ E + I C + + Q ++R R KL ++KE
Sbjct: 402 KQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLR-RVTKLFQLKE 458
>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
Rad31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 132 DVNSDFESETSDIEDVADSVLRKK----KPRVEIEYETESVASVSK 7
DV F E SDI + +V +KK P VEI+ +T ++ + +
Sbjct: 70 DVEEQFFIEASDIGQLRANVFKKKLHELNPLVEIDTDTSLISEIDE 115
>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +3
Query: 354 RCHCKCLFLISLTIVFLLHYLF-----WQQLKP 437
R H L+ +SLTI++ + YLF W L+P
Sbjct: 3 RIHKVILYYVSLTILYRVTYLFDLEEPWSTLRP 35
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 21 RRTPFHIQFQREAFSFSVPS 80
R+TPFH F+R SF PS
Sbjct: 595 RQTPFHSPFERLHKSFHFPS 614
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 141 ENVDVNSDFESETSDIEDV 85
E D+N D ESE D+ED+
Sbjct: 95 ETSDLNIDVESEVFDLEDI 113
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 541 YLHKSLFAFSFNKCRPVQ*VFIYLMYCLLKVSGQFHFLPLFCWEHYSLSCLHIQINNAIF 720
++ K LFAFS V ++ + K GQF F P+ C S CL + I
Sbjct: 208 FIAKILFAFSIIFHSGVFSYKLFRAILIRKKIGQFPFGPMQCILVISCQCLIVPATFTII 267
Query: 721 FSY 729
S+
Sbjct: 268 DSF 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,963
Number of Sequences: 5004
Number of extensions: 57777
Number of successful extensions: 202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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