Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12j09
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057... 179 3e-45
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640... 138 6e-33
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413... 32 0.46
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 1.4
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 30 2.4
12_01_0982 + 9945920-9946066,9946185-9946254,9946481-9946526,994... 28 7.4
04_01_0048 + 522423-522552,522641-523374,523453-524828,528100-52... 28 7.4
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 28 7.4
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327... 28 9.8
>07_01_1089 +
10004773-10004831,10004924-10005033,10005631-10005749,
10005833-10005930,10006834-10006921,10006993-10007127,
10007211-10007313,10007506-10007618,10007821-10007868
Length = 290
Score = 179 bits (435), Expect = 3e-45
Identities = 85/159 (53%), Positives = 112/159 (70%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
YN TG+C+RSSCPLANS+YA IR+ +GI YLYMKTAER P K WE+VKL RN+EKA+
Sbjct: 31 YNATGICNRSSCPLANSRYATIRDHDGIFYLYMKTAERAHLPNKLWERVKLPRNYEKAME 90
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
IN++L +WP + K KQR K+TQY IRMRKL+L+ ++++ + RK +KA
Sbjct: 91 VINKHLEFWPKLLVHKIKQRLTKMTQYRIRMRKLQLKVREKVMTMPRKETQRHLRRMDKA 150
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
AA+++ IE +L ERLKKG Y DIYN+P FD L+
Sbjct: 151 EKAAQLEKNIESELKERLKKGVYGDIYNYPFKEFDTILE 189
>07_01_1096 -
10063016-10063117,10063530-10063580,10063924-10064033,
10064367-10064454,10064543-10064603,10065198-10065295,
10065394-10065512,10066593-10066702,10066801-10066859
Length = 265
Score = 138 bits (333), Expect = 6e-33
Identities = 62/97 (63%), Positives = 75/97 (77%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
YN TG+C+RSSCPLANS+YA IR+ +GI YLYMKTAER P K WE+VKL RN+EKAI
Sbjct: 31 YNATGICNRSSCPLANSRYATIRDHDGIFYLYMKTAERAHHPNKLWERVKLPRNYEKAIE 90
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLR 502
IN +L +WP + K KQR K+TQY IRMRKL+L+
Sbjct: 91 VINRHLEFWPKLLVHKIKQRLTKMTQYRIRMRKLRLK 127
>02_01_0564 -
4136114-4136566,4136977-4137047,4137197-4137275,
4137380-4137535,4137867-4137938,4138081-4138161,
4138237-4138302,4138482-4138547,4138648-4138698,
4138982-4139109,4139239-4139377,4139606-4139643,
4139679-4139748,4140194-4140277
Length = 517
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 96 YQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQF 209
YQ Q+H H H + FQ H Q+ Y Q QQ HQ+
Sbjct: 446 YQPHHFQDHQ-HHHNMYFQTHYQQNQIYQQQQQQQHQY 482
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 21 RRTPFHIQFQREA-FSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQ 197
+++PF Q +A F S +P + Q Q+ Q HQ+ + H P ++ QPQQ
Sbjct: 119 QQSPFQPTAQHQAPFQHSQRAPYQQQQQQMSQQPPA-HQYPSTHPQHMPYQHGHYMQPQQ 177
Query: 198 THQFVQLP 221
QF Q P
Sbjct: 178 -QQFQQGP 184
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +3
Query: 78 SPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFV---QLPSPVPFPTLV 248
S P PQ K + NH H + +H Q + QPQ ++V P P P PTL
Sbjct: 3 SAPPPQQSK-PSYNHRRHNNAAPRHHHGQQQQQPQPQPQPQQRYVPKPAAPKPSPPPTLT 61
Query: 249 QFL 257
L
Sbjct: 62 TAL 64
>12_01_0982 +
9945920-9946066,9946185-9946254,9946481-9946526,
9947009-9947068,9947484-9947775
Length = 204
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 129 HQHFLSFQNHSPQHCRYHCQPQQTHQFVQLPSPV 230
H H H+P+H R C P H VQ P+ +
Sbjct: 17 HLHRTVRHPHNPRHARPLCVPPCPHSAVQTPNQI 50
>04_01_0048 +
522423-522552,522641-523374,523453-524828,528100-528400
Length = 846
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 314 QKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQL 213
+K + A K K+K K +K+ ++WK NW+ +L
Sbjct: 133 EKWFTFPAEAKDKLKRKAFQKMGKAWK-NWKSKL 165
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 133 NIFFPSRITLLSTVDITVSLNKLISLFNC 219
N+F P +T LS++DIT NK I C
Sbjct: 556 NVFSPRLLTSLSSIDITAKENKGIKRHVC 584
>12_01_0411 +
3276679-3276687,3277430-3277493,3278256-3278297,
3279047-3279063,3280011-3281258
Length = 459
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 363 CKCLFLISLTIVFLLHYLFWQQLKPSLLFFSPVF 464
CK + + +F+ +L W +LKPS L +P F
Sbjct: 108 CKAWHAMISSPIFINAHLEWSKLKPSSLLMAPGF 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,055,889
Number of Sequences: 37544
Number of extensions: 333038
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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