Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12j09
(794 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050528-1|AAH50528.1| 300|Homo sapiens RNA binding motif prote... 225 1e-58
BC039740-1|AAH39740.1| 300|Homo sapiens RNA binding motif prote... 225 1e-58
BC028230-1|AAH28230.1| 300|Homo sapiens RNA binding motif prote... 225 1e-58
AK027469-1|BAB55134.1| 300|Homo sapiens protein ( Homo sapiens ... 225 1e-58
AF251062-1|AAK34952.1| 300|Homo sapiens RNA binding protein pro... 225 1e-58
BC015965-1|AAH15965.1| 127|Homo sapiens Unknown (protein for IM... 140 7e-33
BC129990-1|AAI29991.1| 695|Homo sapiens nuclear fragile X menta... 33 0.90
BC129989-1|AAI29990.1| 120|Homo sapiens NUFIP2 protein protein. 33 0.90
BC108307-1|AAI08308.1| 695|Homo sapiens nuclear fragile X menta... 33 0.90
BC107596-1|AAI07597.1| 439|Homo sapiens LOC130940 protein protein. 33 0.90
AY232289-1|AAP69984.1| 695|Homo sapiens proliferation-inducing ... 33 0.90
AJ493465-1|CAD38278.1| 695|Homo sapiens FMRP interacting protei... 33 0.90
AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein. 33 0.90
AC069146-2|AAX88933.1| 221|Homo sapiens unknown protein. 33 0.90
AB037742-1|BAA92559.1| 714|Homo sapiens KIAA1321 protein protein. 33 0.90
Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 31 6.3
U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 31 6.3
U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 31 6.3
L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 31 6.3
CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 31 6.3
BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 31 6.3
BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 31 6.3
BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 31 6.3
BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 31 6.3
BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 31 6.3
BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 31 6.3
>BC050528-1|AAH50528.1| 300|Homo sapiens RNA binding motif protein
13 protein.
Length = 300
Score = 225 bits (551), Expect = 1e-58
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
Y+LTGLC+RSSCPLANS+YA I+EE G YLYMK ER FP + WE+V+LS+N+EKA+
Sbjct: 33 YSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKALE 92
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R ++LVP+ +K+ EKA
Sbjct: 93 QIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKA 152
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
L+AA++DNAIEK+LLERLK+ TY DIYNFP AFD AL+
Sbjct: 153 LIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191
>BC039740-1|AAH39740.1| 300|Homo sapiens RNA binding motif protein
13 protein.
Length = 300
Score = 225 bits (551), Expect = 1e-58
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
Y+LTGLC+RSSCPLANS+YA I+EE G YLYMK ER FP + WE+V+LS+N+EKA+
Sbjct: 33 YSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKALE 92
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R ++LVP+ +K+ EKA
Sbjct: 93 QIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKA 152
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
L+AA++DNAIEK+LLERLK+ TY DIYNFP AFD AL+
Sbjct: 153 LIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191
>BC028230-1|AAH28230.1| 300|Homo sapiens RNA binding motif protein
13 protein.
Length = 300
Score = 225 bits (551), Expect = 1e-58
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
Y+LTGLC+RSSCPLANS+YA I+EE G YLYMK ER FP + WE+V+LS+N+EKA+
Sbjct: 33 YSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKALE 92
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R ++LVP+ +K+ EKA
Sbjct: 93 QIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKA 152
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
L+AA++DNAIEK+LLERLK+ TY DIYNFP AFD AL+
Sbjct: 153 LIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191
>AK027469-1|BAB55134.1| 300|Homo sapiens protein ( Homo sapiens
cDNA FLJ14563 fis, clone NT2RM4000215, weakly similar to
MAK16 PROTEIN. ).
Length = 300
Score = 225 bits (551), Expect = 1e-58
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
Y+LTGLC+RSSCPLANS+YA I+EE G YLYMK ER FP + WE+V+LS+N+EKA+
Sbjct: 33 YSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKALE 92
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R ++LVP+ +K+ EKA
Sbjct: 93 QIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKA 152
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
L+AA++DNAIEK+LLERLK+ TY DIYNFP AFD AL+
Sbjct: 153 LIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191
>AF251062-1|AAK34952.1| 300|Homo sapiens RNA binding protein
protein.
Length = 300
Score = 225 bits (551), Expect = 1e-58
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
Y+LTGLC+RSSCPLANS+YA I+EE G YLYMK ER FP + WE+V+LS+N+EKA+
Sbjct: 33 YSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKALE 92
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIXXXXXXXXEKA 433
QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R ++LVP+ +K+ EKA
Sbjct: 93 QIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKA 152
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
L+AA++DNAIEK+LLERLK+ TY DIYNFP AFD AL+
Sbjct: 153 LIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191
>BC015965-1|AAH15965.1| 127|Homo sapiens Unknown (protein for
IMAGE:4045270) protein.
Length = 127
Score = 140 bits (338), Expect = 7e-33
Identities = 61/95 (64%), Positives = 76/95 (80%)
Frame = -3
Query: 792 YNLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIH 613
Y+LTGLC+RSSCPLANS+YA I+EE G YLYMK ER FP + WE+V+LS+N+EKA+
Sbjct: 33 YSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKALE 92
Query: 612 QINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLK 508
QI+ENL+YWP FI+ KCKQRF KITQ + +K K
Sbjct: 93 QIDENLIYWPRFIRHKCKQRFTKITQKKKKKKKKK 127
>BC129990-1|AAI29991.1| 695|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 2 protein.
Length = 695
Score = 33.5 bits (73), Expect = 0.90
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 90 PQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQ 215
P + Q Q H H F NHS H +H QQ HQ++Q
Sbjct: 19 PHHHPQQQQQQPHHHHHYYFYNHSHNH-HHHHHHQQPHQYLQ 59
>BC129989-1|AAI29990.1| 120|Homo sapiens NUFIP2 protein protein.
Length = 120
Score = 33.5 bits (73), Expect = 0.90
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 90 PQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQ 215
P + Q Q H H F NHS H +H QQ HQ++Q
Sbjct: 19 PHHHPQQQQQQPHHHHHYYFYNHSHNH-HHHHHHQQPHQYLQ 59
>BC108307-1|AAI08308.1| 695|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 2 protein.
Length = 695
Score = 33.5 bits (73), Expect = 0.90
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 90 PQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQ 215
P + Q Q H H F NHS H +H QQ HQ++Q
Sbjct: 19 PHHHPQQQQQQPHHHHHYYFYNHSHNH-HHHHHHQQPHQYLQ 59
>BC107596-1|AAI07597.1| 439|Homo sapiens LOC130940 protein protein.
Length = 439
Score = 33.5 bits (73), Expect = 0.90
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = -1
Query: 317 KQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRLTVISTVLRRVILEGKK 138
K+K L +A K+K+K W +K Q W+ R L +L L +L ++ R ++ ++
Sbjct: 252 KKKELLQRAEKKKKIKKYWAKK-KQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQ 310
Query: 137 MLMSTVILSLKLLILR 90
L+ ++ K + L+
Sbjct: 311 ELLERRLMEKKEVALQ 326
>AY232289-1|AAP69984.1| 695|Homo sapiens proliferation-inducing
gene 1 protein.
Length = 695
Score = 33.5 bits (73), Expect = 0.90
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 90 PQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQ 215
P + Q Q H H F NHS H +H QQ HQ++Q
Sbjct: 19 PHHHPQQQQQQPHHHHHYYFYNHSHNH-HHHHHHQQPHQYLQ 59
>AJ493465-1|CAD38278.1| 695|Homo sapiens FMRP interacting protein,
82kD protein.
Length = 695
Score = 33.5 bits (73), Expect = 0.90
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 90 PQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQ 215
P + Q Q H H F NHS H +H QQ HQ++Q
Sbjct: 19 PHHHPQQQQQQPHHHHHYYFYNHSHNH-HHHHHHQQPHQYLQ 59
>AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 33.5 bits (73), Expect = 0.90
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = -1
Query: 317 KQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRLTVISTVLRRVILEGKK 138
K+K L +A K+K+K W +K Q W+ R L +L L +L ++ R ++ ++
Sbjct: 404 KKKELLQRAEKKKKIKKYWAKK-KQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQ 462
Query: 137 MLMSTVILSLKLLILR 90
L+ ++ K + L+
Sbjct: 463 ELLERRLMEKKEVALQ 478
>AC069146-2|AAX88933.1| 221|Homo sapiens unknown protein.
Length = 221
Score = 33.5 bits (73), Expect = 0.90
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = -1
Query: 317 KQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRLTVISTVLRRVILEGKK 138
K+K L +A K+K+K W +K Q W+ R L +L L +L ++ R ++ ++
Sbjct: 34 KKKELLQRAEKKKKIKKYWAKK-KQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQ 92
Query: 137 MLMSTVILSLKLLILR 90
L+ ++ K + L+
Sbjct: 93 ELLERRLMEKKEVALQ 108
>AB037742-1|BAA92559.1| 714|Homo sapiens KIAA1321 protein protein.
Length = 714
Score = 33.5 bits (73), Expect = 0.90
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 90 PQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQ 215
P + Q Q H H F NHS H +H QQ HQ++Q
Sbjct: 38 PHHHPQQQQQQPHHHHHYYFYNHSHNH-HHHHHHQQPHQYLQ 78
>Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55
protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA,
complete cds. ).
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
>BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 LSFQNHSPQ-HCRYHCQPQQTHQFVQLPSPVPFP 239
L QNH+P+ H ++H Q Q Q Q P P P P
Sbjct: 9 LEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIP 42
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,564,588
Number of Sequences: 237096
Number of extensions: 1962589
Number of successful extensions: 9345
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9317
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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