Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12j09
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical pr... 194 5e-50
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 33 0.24
AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical ... 31 1.3
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 30 1.7
AC024808-3|AAK29925.1| 183|Caenorhabditis elegans Hypothetical ... 30 1.7
U64843-11|AAL08038.1| 365|Caenorhabditis elegans Hypothetical p... 30 2.2
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 30 2.2
U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 30 2.2
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 30 2.2
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 29 5.1
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 29 5.1
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 29 5.1
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 29 5.1
AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical ... 29 5.1
U97009-8|AAC69032.1| 534|Caenorhabditis elegans Udp-glucuronosy... 28 6.7
AF040653-12|AAB95023.2| 257|Caenorhabditis elegans Hypothetical... 28 6.7
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 8.9
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 8.9
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 8.9
AF036704-2|ABA00183.1| 281|Caenorhabditis elegans Hypothetical ... 28 8.9
>U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical
protein C16A3.6 protein.
Length = 323
Score = 194 bits (474), Expect = 5e-50
Identities = 89/159 (55%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Frame = -3
Query: 789 NLTGLCSRSSCPLANSKYAPIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQ 610
NLTGLC+R+SCPLANS+YA +REENG+ YLY K ER +P + WEK KLS++ KA+ Q
Sbjct: 33 NLTGLCNRASCPLANSQYATVREENGVCYLYAKVVERSHYPRRLWEKTKLSKDMNKALEQ 92
Query: 609 INENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLR-RVKELVPIQRKIXXXXXXXXEKA 433
I++ LL+W +++ KCK R ++I QYLIRMRK+ +R K+L+PI RK+ EKA
Sbjct: 93 ISDQLLHWSEYVRHKCKARLIRIHQYLIRMRKMAVRGNQKKLIPIGRKVERREKRREEKA 152
Query: 432 LVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 316
LVAA++D+AIEK+LL RLK+GTY D+YNF Q AF+ L+
Sbjct: 153 LVAAKLDHAIEKELLARLKQGTYGDVYNFRQEAFEQMLE 191
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/98 (25%), Positives = 44/98 (44%)
Frame = -3
Query: 648 VKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRK 469
+ + FEK + + N+N + + IK K K+ VK+ + + K L +VKE V +K
Sbjct: 577 ISFNYKFEKTLEKTNKNKIEMKSAIK-KVKEAIVKVEKAIGLSYKYYLEKVKEAVEEVKK 635
Query: 468 IXXXXXXXXEKALVAARIDNAIEKQLLERLKKGTYNDI 355
+ + + A+ + K LE+ K Y I
Sbjct: 636 VLGVNYEDCLEKIGKAQEETEKVKTELEQEKGIDYQSI 673
>AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical
protein Y41G9A.6 protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 36 HIQFQREAFSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYH-----C-QPQQ 197
H Q Q+ AF+F+ P P P + + L F ++P R + C QP
Sbjct: 83 HKQLQQNAFNFANPFQPEPSPPVWPFDSTTSISSKLRFSPYTPMPFRNNGSGNVCTQPNA 142
Query: 198 THQFVQLPSPVPFP 239
HQ++Q +PV P
Sbjct: 143 LHQYLQPAAPVVQP 156
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 87 RPQY-QKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQLP-SPVPFPTLVQFLS 260
+P Y Q +Q N+ HQ Q QH Q Q Q Q P + P P ++
Sbjct: 29 QPSYPQNYQNHNYNAHQQHYHQQQQQQQHAHQQKQASQQQQQQQYPYNNYPSPNAIKAYQ 88
Query: 261 PLHLHLPFQIRFHQ 302
+ +P F+Q
Sbjct: 89 AAYPSVPHASVFNQ 102
>AC024808-3|AAK29925.1| 183|Caenorhabditis elegans Hypothetical
protein Y53G8AM.6 protein.
Length = 183
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 512 SFLIRIKYCVIFTNLCLHLALINAGQYNKFSFI*CIAFSKFL 637
SF + I+ CV +H ++A YN F+F ++F K L
Sbjct: 48 SFQVSIEVCVRILLSLVHNVFVHASYYNVFNFENLVSFDKLL 89
>U64843-11|AAL08038.1| 365|Caenorhabditis elegans Hypothetical
protein K06C4.17 protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 648 VKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 529
+ L + FEK IH+IN WP A K F+K+ QY+
Sbjct: 196 LSLPKFFEKGIHEING----WPWQTNAVEKYTFLKVVQYV 231
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/77 (29%), Positives = 31/77 (40%)
Frame = +3
Query: 21 RRTPFHIQFQREAFSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQT 200
++ P Q Q+ F +PQ+Q Q Q+F Q P + QPQQ
Sbjct: 51 QQQPQFQQQQQNYQQFLAQQQYQPQFQAQQQPQQ--PQYFQPQQQQQPVQYQQQ-QPQQP 107
Query: 201 HQFVQLPSPVPFPTLVQ 251
Q+ Q P P P P Q
Sbjct: 108 LQYQQQPQPAPPPIYSQ 124
>U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical
protein C05D10.3 protein.
Length = 598
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 13 NASDGLRFIFNFNARLFLSQYRVRHVLNIRSFRLKITVDIN--IFFPSRITLLSTVDITV 186
NAS +F+ F R +L+ R ++L++R ++ IT I +FF + +T + + I
Sbjct: 312 NASFWTQFLALF-WRSWLTVIRDPNLLSVRLLQILITAFITGIVFFQTPVTPATIISING 370
Query: 187 SLNKLISLFNCLLQFP 234
+ I N +LQFP
Sbjct: 371 IMFNHIRNMNFMLQFP 386
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 81 PPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQQTHQFVQLPSPVPFPTLVQ 251
PP+PQ+ + Q HQ HSP H + Q QQ +Q SP FP+ Q
Sbjct: 477 PPQPQHSPYPQQQQMHHQ----MVQHSPHHYQQQ-QQQQQYQQQHQQSP-QFPSYQQ 527
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 FQNH-SPQHCRYHCQPQQTHQFVQLPSPVPFPTLVQ 251
F +H SP R+H P HQ VQ P P P+ +Q
Sbjct: 1364 FPSHTSPMSQRFHTPPSVGHQMVQSPLSQPNPSPLQ 1399
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 93 QYQKFQTQNHC*HQHFLSFQNHSP--QHCRYHCQPQQTHQ 206
Q Q Q Q H Q+ +S+ NH Q YH Q QQ Q
Sbjct: 85 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQ 124
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 93 QYQKFQTQNHC*HQHFLSFQNHSP--QHCRYHCQPQQTHQ 206
Q Q Q Q H Q+ +S+ NH Q YH Q QQ Q
Sbjct: 152 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQ 191
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 93 QYQKFQTQNHC*HQHFLSFQNHSP--QHCRYHCQPQQTHQ 206
Q Q Q Q H Q+ +S+ NH Q YH Q QQ Q
Sbjct: 152 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQ 191
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 93 QYQKFQTQNHC*HQHFLSFQNHSP--QHCRYHCQPQQTHQ 206
Q Q Q Q H Q+ +S+ NH Q YH Q QQ Q
Sbjct: 152 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQ 191
>AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical
protein F56F11.5 protein.
Length = 509
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 601 FIYLMYCLLKVSGQFHFLPLFCWEHYSLSCLHIQINNAIFFS 726
F++++ ++K G F F+ FC + L+ +H+ I+ ++F S
Sbjct: 333 FVHILKKMMKTVGMFVFI--FCTFWFVLAVVHVSISRSMFSS 372
>U97009-8|AAC69032.1| 534|Caenorhabditis elegans
Udp-glucuronosyltransferase protein12 protein.
Length = 534
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 390 TIVFLLHYLFWQQLKPSLLFFSPVF 464
T +FLL +LF++ +L F+P+F
Sbjct: 5 TFIFLLTFLFFECYSSKILIFNPIF 29
>AF040653-12|AAB95023.2| 257|Caenorhabditis elegans Hypothetical
protein K05F6.10 protein.
Length = 257
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 147 RKENVDVNSDFESETSDIEDVADSVLRKKKPRVEIEYETESVASVSKR 4
RK + S+ S +S+IE +AD V + + ETE +A V+ R
Sbjct: 5 RKRVTALESEKNSVSSEIESIADMVKQLSLINDSMARETEQIAKVNVR 52
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = +3
Query: 24 RTPFHIQFQREAFSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQ--- 194
R F Q Q+ S Q Q+ Q Q+H QHF + + Q H QPQ
Sbjct: 129 RAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHHQQPQHF-NHPSQQNQMIMQHRQPQMHH 187
Query: 195 -QTHQFVQ 215
Q HQ VQ
Sbjct: 188 NQQHQMVQ 195
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = +3
Query: 24 RTPFHIQFQREAFSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQ--- 194
R F Q Q+ S Q Q+ Q Q+H QHF + + Q H QPQ
Sbjct: 129 RAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHHQQPQHF-NHPSQQNQMIMQHRQPQMHH 187
Query: 195 -QTHQFVQ 215
Q HQ VQ
Sbjct: 188 NQQHQMVQ 195
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = +3
Query: 24 RTPFHIQFQREAFSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQNHSPQHCRYHCQPQ--- 194
R F Q Q+ S Q Q+ Q Q+H QHF + + Q H QPQ
Sbjct: 129 RAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHHQQPQHF-NHPSQQNQMIMQHRQPQMHH 187
Query: 195 -QTHQFVQ 215
Q HQ VQ
Sbjct: 188 NQQHQMVQ 195
>AF036704-2|ABA00183.1| 281|Caenorhabditis elegans Hypothetical
protein ZK185.4 protein.
Length = 281
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 675 MFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKL 511
M K++E V R + Q+N LL+W F+ F +T ++ K+
Sbjct: 1 MLMEKRFESVHKKRPQAVELFQLNTTLLFWVGFVPPLFAAVFAILTAIILHQDKI 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,974
Number of Sequences: 27780
Number of extensions: 329300
Number of successful extensions: 1290
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -