Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j09
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.61 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.61 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.7  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   10.0 
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   10.0 
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   10.0 
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   10.0 
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   10.0 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   10.0 
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   10.0 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   10.0 
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   10.0 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   10.0 

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 345 ESCRCHCKCLFLISLTIVFL 404
           E CRCH +C+  ++L ++ L
Sbjct: 477 EPCRCHARCIARLALDMMDL 496


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 345 ESCRCHCKCLFLISLTIVFL 404
           E CRCH +C+  ++L ++ L
Sbjct: 477 EPCRCHARCIARLALDMMDL 496


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 114 ESETSDIEDVADSVLRKKKP 55
           ESETS  E+ AD+   KK+P
Sbjct: 316 ESETSSDEEEADTRPLKKEP 335


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 645 KLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKIT 538
           K    F+KA+  ++EN+  +  ++K    +   K T
Sbjct: 215 KFEEAFQKALRMVDENINGFDPYVKTPNDEELEKPT 250


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 110 QIPVPVPFP 118


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 110 QIPVPVPFP 118


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 110 QIPVPVPFP 118


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 110 QIPVPVPFP 118


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 343 QIPVPVPFP 351


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 343 QIPVPVPFP 351


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 343 QIPVPVPFP 351


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 343 QIPVPVPFP 351


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 QLPSPVPFP 239
           Q+P PVPFP
Sbjct: 332 QIPVPVPFP 340


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 21  RRTPFHIQFQREAFSFSVPSPPRPQYQKFQTQNHC*HQHFLSFQN 155
           RR P+ ++F    F    P+     Y K  T+  C  +  L+ QN
Sbjct: 421 RRNPWFVEFWEHHFQCRYPNASVTPYNKNYTK-FCSTEKRLTKQN 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,302
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)