Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j08
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   151   1e-37
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   4.3  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   5.6  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   5.6  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   7.5  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   7.5  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   9.9  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  151 bits (366), Expect = 1e-37
 Identities = 67/84 (79%), Positives = 76/84 (90%)
 Frame = -1

Query: 748 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 569
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 568 VTHETRHFIYFYLGQVAILLFKSG 497
           VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 62  VTHESRHFIYFYLGTVAFLLFKSG 85


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 398 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 523
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = -1

Query: 313 ESGCTVFTYTVYLIGNSQCWTLTASYLFT*SQAHAVYVCTVLAIT*GTFDL*TFTSPSVF 134
           ESG  +     +LI N  C     S+L    QA   Y+C  L    G F L      +V 
Sbjct: 122 ESGFCLPDQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCDYLRS--GEFPL------TVL 173

Query: 133 ILKEILVNYYPR 98
           I   +L  YYP+
Sbjct: 174 IHHVMLYQYYPK 185


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -1

Query: 787 KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNP 608
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E       +K+     N 
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN- 585

Query: 607 TWHCIVGRN 581
            +H IV  N
Sbjct: 586 KYHPIVSSN 594


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +3

Query: 636 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 785
           L N   SF + N   +      A+ C+SSL+       L    L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 676 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 789
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 437 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 559
           P+DN A+     IE +L+G+T  KE+  H+ ++     ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 784 QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 668
           +K+T +  KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,137
Number of Sequences: 5004
Number of extensions: 62269
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)