Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j06
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           29   2.9  
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    27   6.6  
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     27   8.8  
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891...    27   8.8  

>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 196 CQNMTYPRCTIFESSISQNNVTFF---KYVLKLNQRLNLKND 312
           CQ     R  I   SISQN VTFF   K++ K  +RL+L  D
Sbjct: 531 CQTYGMMREFISHMSISQNFVTFFCDDKFLPKYVRRLSLHGD 572


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 116 RFFPVGNPSTPPHRPHPKA 172
           RFFP+ N S  PH+P P A
Sbjct: 502 RFFPLFNSSLFPHKPPPTA 520


>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 RFFPVGNPSTPPHRPHPKAYIKFLCNYAKI 205
           R    GNP  PP + HP   + F+CN+  +
Sbjct: 317 RLIVKGNPPPPPKKGHPG--VLFVCNHRTV 344


>01_01_1124 +
           8916863-8917090,8917745-8917936,8918115-8918280,
           8918373-8918794
          Length = 335

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 431 HTVFRTRFTYYYERLFSKEGTGRAKY 508
           HT+  +R T + +RL+++ G G A Y
Sbjct: 198 HTIGMSRCTSFRQRLYNQSGNGMADY 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,173,231
Number of Sequences: 37544
Number of extensions: 197319
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)