Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12j06
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 291 LIQFEHIFKKSNIILRYRTLENCTSRI 211
           L+Q +HI K+ +   RY+ + +C  RI
Sbjct: 37  LLQVQHISKQISEEQRYKGMIDCFVRI 63


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 291 LIQFEHIFKKSNIILRYRTLENCTSRI 211
           L+Q +HI K+ +   RY+ + +C  RI
Sbjct: 37  LLQVQHISKQISEEQRYKGMIDCFVRI 63


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 137 PSTPPHRPHPKAY 175
           PS  PH+ HP  Y
Sbjct: 314 PSYHPHQHHPSQY 326


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 135 TPVPLRIVRILRHTLNFYVIMPKYDVS 215
           T +PLR + ILR + N  V  P + V+
Sbjct: 885 TFLPLRSLEILRLSGNRLVTFPVWQVT 911


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,475
Number of Sequences: 438
Number of extensions: 2934
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)