Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i24
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 406 SNSATSPVLITRTRSESMIVFKRCAIVNTVHEAKAR 299
           S + TSP+  T++      +   C++ N+ H+ K R
Sbjct: 326 STTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLR 361


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 236 SVAYQQLARQLIQ--NSLRINVGCGLVHN*NFIGSEYGSCQAHQLSLAHGE 90
           S+A Q +   + Q  +S  +     ++H   +I  ++GS +  Q ++  GE
Sbjct: 12  SIACQDVTSAIHQRKSSKNLEHSMNVIHEWKYIDYDFGSDEKRQAAIQSGE 62


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 107 SLAHGEVRSTFCHFEIQRRNGRFHVHL 27
           +L+H E      +F +QR  G F + +
Sbjct: 194 TLSHAEYSMLLVYFHLQRHMGNFLIQV 220


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +3

Query: 357 DSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVRETGEKNSLKLFE 497
           D D +L +   E + ++H  + + +    L    RE  + +  +LFE
Sbjct: 266 DDDLILTLGKKEFSHYEHQNVFVKNSGQWLREYDRELEDFDG-RLFE 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,364
Number of Sequences: 438
Number of extensions: 4819
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)