Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12i23
(730 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38846-1|AAC50384.1| 539|Homo sapiens stimulator of TAR RNA bin... 51 5e-06
BC106934-1|AAI06935.1| 539|Homo sapiens chaperonin containing T... 51 5e-06
BC106933-1|AAI06934.1| 539|Homo sapiens chaperonin containing T... 51 5e-06
BC014676-1|AAH14676.1| 250|Homo sapiens Unknown (protein for IM... 51 5e-06
AF026291-1|AAC96010.1| 539|Homo sapiens chaperonin containing t... 51 5e-06
AC107081-1|AAY24140.1| 539|Homo sapiens unknown protein. 51 5e-06
D43950-1|BAA07894.2| 553|Homo sapiens KIAA0098 protein protein. 37 0.064
BC035499-1|AAH35499.1| 541|Homo sapiens chaperonin containing T... 37 0.064
BC009454-1|AAH09454.1| 387|Homo sapiens Unknown (protein for IM... 37 0.064
BC006543-1|AAH06543.1| 541|Homo sapiens chaperonin containing T... 37 0.064
BC002971-1|AAH02971.1| 539|Homo sapiens Unknown (protein for IM... 37 0.064
AF275798-1|AAG23814.1| 171|Homo sapiens PNAS-102 protein. 37 0.064
BC019066-1|AAH19066.1| 437|Homo sapiens solute carrier family 1... 31 5.6
BC012048-1|AAH12048.2| 437|Homo sapiens solute carrier family 1... 31 5.6
AY704414-1|AAW30130.1| 437|Homo sapiens bile acid transporter S... 31 5.6
>U38846-1|AAC50384.1| 539|Homo sapiens stimulator of TAR RNA
binding protein.
Length = 539
Score = 50.8 bits (116), Expect = 5e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 646 EHVLQPLHVTASALALATETVRAILKIDDIINT 548
E V+QPL V+ SAL LATETVR+ILKIDD++NT
Sbjct: 506 ELVVQPLLVSVSALTLATETVRSILKIDDVVNT 538
>BC106934-1|AAI06935.1| 539|Homo sapiens chaperonin containing
TCP1, subunit 4 (delta) protein.
Length = 539
Score = 50.8 bits (116), Expect = 5e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 646 EHVLQPLHVTASALALATETVRAILKIDDIINT 548
E V+QPL V+ SAL LATETVR+ILKIDD++NT
Sbjct: 506 ELVVQPLLVSVSALTLATETVRSILKIDDVVNT 538
>BC106933-1|AAI06934.1| 539|Homo sapiens chaperonin containing
TCP1, subunit 4 (delta) protein.
Length = 539
Score = 50.8 bits (116), Expect = 5e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 646 EHVLQPLHVTASALALATETVRAILKIDDIINT 548
E V+QPL V+ SAL LATETVR+ILKIDD++NT
Sbjct: 506 ELVVQPLLVSVSALTLATETVRSILKIDDVVNT 538
>BC014676-1|AAH14676.1| 250|Homo sapiens Unknown (protein for
IMAGE:4158571) protein.
Length = 250
Score = 50.8 bits (116), Expect = 5e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 646 EHVLQPLHVTASALALATETVRAILKIDDIINT 548
E V+QPL V+ SAL LATETVR+ILKIDD++NT
Sbjct: 217 ELVVQPLLVSVSALTLATETVRSILKIDDVVNT 249
>AF026291-1|AAC96010.1| 539|Homo sapiens chaperonin containing
t-complex polypeptide 1, delta subunit protein.
Length = 539
Score = 50.8 bits (116), Expect = 5e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 646 EHVLQPLHVTASALALATETVRAILKIDDIINT 548
E V+QPL V+ SAL LATETVR+ILKIDD++NT
Sbjct: 506 ELVVQPLLVSVSALTLATETVRSILKIDDVVNT 538
>AC107081-1|AAY24140.1| 539|Homo sapiens unknown protein.
Length = 539
Score = 50.8 bits (116), Expect = 5e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 646 EHVLQPLHVTASALALATETVRAILKIDDIINT 548
E V+QPL V+ SAL LATETVR+ILKIDD++NT
Sbjct: 506 ELVVQPLLVSVSALTLATETVRSILKIDDVVNT 538
>D43950-1|BAA07894.2| 553|Homo sapiens KIAA0098 protein protein.
Length = 553
Score = 37.1 bits (82), Expect = 0.064
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -1
Query: 658 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 557
DM+ +HV++ L ++LAT+ VR ILKIDDI
Sbjct: 512 DMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 545
>BC035499-1|AAH35499.1| 541|Homo sapiens chaperonin containing
TCP1, subunit 5 (epsilon) protein.
Length = 541
Score = 37.1 bits (82), Expect = 0.064
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -1
Query: 658 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 557
DM+ +HV++ L ++LAT+ VR ILKIDDI
Sbjct: 500 DMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533
>BC009454-1|AAH09454.1| 387|Homo sapiens Unknown (protein for
IMAGE:3534054) protein.
Length = 387
Score = 37.1 bits (82), Expect = 0.064
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -1
Query: 658 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 557
DM+ +HV++ L ++LAT+ VR ILKIDDI
Sbjct: 346 DMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 379
>BC006543-1|AAH06543.1| 541|Homo sapiens chaperonin containing
TCP1, subunit 5 (epsilon) protein.
Length = 541
Score = 37.1 bits (82), Expect = 0.064
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -1
Query: 658 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 557
DM+ +HV++ L ++LAT+ VR ILKIDDI
Sbjct: 500 DMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533
>BC002971-1|AAH02971.1| 539|Homo sapiens Unknown (protein for
IMAGE:3543711) protein.
Length = 539
Score = 37.1 bits (82), Expect = 0.064
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -1
Query: 658 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 557
DM+ +HV++ L ++LAT+ VR ILKIDDI
Sbjct: 498 DMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 531
>AF275798-1|AAG23814.1| 171|Homo sapiens PNAS-102 protein.
Length = 171
Score = 37.1 bits (82), Expect = 0.064
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -1
Query: 658 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 557
DM+ +HV++ L ++LAT+ VR ILKIDDI
Sbjct: 130 DMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 163
>BC019066-1|AAH19066.1| 437|Homo sapiens solute carrier family 10
(sodium/bile acid cotransporter family), member 4
protein.
Length = 437
Score = 30.7 bits (66), Expect = 5.6
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = +1
Query: 175 KRTSLWNTGSQSPTKFLTT*LDKLIFPTQ*MSKMDLFPLLCDKYVLF 315
KRT TGSQ+ L T + KL FP Q + M +FPLL Y LF
Sbjct: 329 KRTVCLETGSQNVQ--LCTAILKLAFPPQFIGSMYMFPLL---YALF 370
>BC012048-1|AAH12048.2| 437|Homo sapiens solute carrier family 10
(sodium/bile acid cotransporter family), member 4
protein.
Length = 437
Score = 30.7 bits (66), Expect = 5.6
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = +1
Query: 175 KRTSLWNTGSQSPTKFLTT*LDKLIFPTQ*MSKMDLFPLLCDKYVLF 315
KRT TGSQ+ L T + KL FP Q + M +FPLL Y LF
Sbjct: 329 KRTVCLETGSQNVQ--LCTAILKLAFPPQFIGSMYMFPLL---YALF 370
>AY704414-1|AAW30130.1| 437|Homo sapiens bile acid transporter
SLC10A4 protein.
Length = 437
Score = 30.7 bits (66), Expect = 5.6
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = +1
Query: 175 KRTSLWNTGSQSPTKFLTT*LDKLIFPTQ*MSKMDLFPLLCDKYVLF 315
KRT TGSQ+ L T + KL FP Q + M +FPLL Y LF
Sbjct: 329 KRTVCLETGSQNVQ--LCTAILKLAFPPQFIGSMYMFPLL---YALF 370
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,595,179
Number of Sequences: 237096
Number of extensions: 1781915
Number of successful extensions: 6611
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6611
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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