Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i21
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.25 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.3  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.3  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 541 FLTCLYA*FQTFWTDCNTRIYTLQYLQKVSDNLWG 645
           F  C    F   + D   ++Y   + Q+ S NLWG
Sbjct: 455 FFICPSIHFAQLFADRGMKVYYYFFTQRTSTNLWG 489


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 641 GVGRYSYKRFLILSCNGFCKVF 706
           G   Y  +R LILSC G   +F
Sbjct: 172 GTVNYLMRRHLILSCQGRLNIF 193


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 641 GVGRYSYKRFLILSCNGFCKVF 706
           G   Y  +R LILSC G   +F
Sbjct: 172 GTVNYLMRRHLILSCQGRLNIF 193


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 641 GVGRYSYKRFLILSCNGFCKVF 706
           G   Y  +R LILSC G   +F
Sbjct: 223 GTVNYLMRRHLILSCQGRLNIF 244


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 641 GVGRYSYKRFLILSCNGFCKVF 706
           G   Y  +R LILSC G   +F
Sbjct: 172 GTVNYLMRRHLILSCQGRLNIF 193


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 559 HIDTSRSRSFVAKALKINAQEIQVPVIG-GHSDKTIIPLFSNLTPRNY 419
           H   S ++    K   + AQ + +  +   H D+TI P+FS L    Y
Sbjct: 84  HYQMSGAKQKKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEY 131


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 363 VPAFLTSLVNISAWH 407
           VP+F+   V + +WH
Sbjct: 126 VPSFVADFVKVLSWH 140


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 67  LRISLLLALHDLKLVYSDLTGSFQIHS*ESDNMLE*FRAVQ 189
           LR+ L LA+HD   + S        H  +   +L+ F+ VQ
Sbjct: 128 LRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQ 168


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 67  LRISLLLALHDLKLVYSDLTGSFQIHS*ESDNMLE*FRAVQ 189
           LR+ L LA+HD   + S        H  +   +L+ F+ VQ
Sbjct: 96  LRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQ 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,858
Number of Sequences: 438
Number of extensions: 4443
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)