Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i17
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 535 FIMSDPNDIQIIYKKLESNVN 597
           F M+D    +I Y+K+E+++N
Sbjct: 566 FTMNDLEPSEIFYEKIETSLN 586


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 535 FIMSDPNDIQIIYKKLESNVN 597
           F M+D    +I Y+K+E+++N
Sbjct: 566 FTMNDLEPSEIFYEKIETSLN 586


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 264 WMHSGVFFFQKTFCFCIVNCLRQACSGG 347
           W+    FF Q   C+C V   R+A   G
Sbjct: 416 WLSCSSFFQQFFHCYCPVRFGRKADPNG 443


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 561 YIIWIGHNENDTSCPVRVKTHIF 493
           Y+  + +NE++  CP  V   I+
Sbjct: 549 YLFDLDYNESEEQCPYTVDAAIY 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,858
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)